Wall clock time and date at job start Mon Mar 30 2020 01:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 O 1.21277 * 120.00023 * 240.00115 * 12 2 1 14 14 N 1.34774 * 119.99464 * 60.00342 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 C 1.53008 * 109.46733 * 180.02562 * 15 14 12 17 17 H 1.08994 * 109.46940 * 60.00269 * 16 15 14 18 18 O 1.42893 * 109.47145 * 299.99933 * 16 15 14 19 19 C 1.50700 * 109.46684 * 180.02562 * 16 15 14 20 20 C 1.33645 * 126.03589 * 264.99847 * 19 16 15 21 21 N 1.31782 * 114.49856 * 180.02562 * 20 19 16 22 22 C 1.29030 * 117.12549 * 0.02562 * 21 20 19 23 23 S 1.70969 * 110.16607 * 359.72203 * 22 21 20 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 27 27 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 29 29 H 1.08998 * 109.47262 * 299.99754 * 15 14 12 30 30 H 1.09002 * 109.47037 * 60.00718 * 15 14 12 31 31 H 0.96702 * 114.00850 * 300.00617 * 18 16 15 32 32 H 1.07998 * 122.74859 * 0.02562 * 20 19 16 33 33 H 1.08001 * 124.91255 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 8 2.7295 -1.6966 -1.1190 14 7 1.7067 -0.2501 -2.4545 15 6 2.1956 -0.9405 -3.6506 16 6 1.6860 -0.2190 -4.8999 17 1 2.0494 0.8086 -4.8996 18 8 0.2571 -0.2190 -4.9004 19 6 2.1883 -0.9296 -6.1303 20 6 3.2853 -0.6162 -6.8264 21 7 3.5117 -1.3915 -7.8677 22 6 2.6666 -2.3411 -8.0890 23 16 1.4365 -2.3238 -6.9018 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 0.7164 1.1670 3.4843 28 1 1.1494 0.5387 -2.5436 29 1 3.2855 -0.9401 -3.6504 30 1 1.8325 -1.9683 -3.6507 31 1 -0.1364 -1.1024 -4.9007 32 1 3.9330 0.2051 -6.5576 33 1 2.7302 -3.0478 -8.9032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645332016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:40 Heat of formation + Delta-G solvation = -46.243829 kcal Electronic energy + Delta-G solvation = -18000.737417 eV Core-core repulsion = 14960.377746 eV Total energy + Delta-G solvation = -3040.359670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06395 -38.97331 -37.53344 -33.85192 -33.70104 -31.74455 -30.44763 -27.97628 -25.55121 -25.10907 -23.13883 -21.94141 -20.68655 -19.45023 -18.63229 -17.19330 -16.36904 -16.17193 -15.82783 -15.07783 -14.89481 -14.65122 -14.25396 -14.21871 -13.99692 -13.64262 -12.93678 -12.68269 -12.15693 -11.94070 -11.69662 -11.44115 -10.99883 -10.82214 -10.72790 -10.66614 -10.24555 -9.97353 -9.91512 -9.60124 -9.27311 -8.97604 -8.63541 -8.51701 -8.32175 -6.02279 -4.05572 0.34465 0.98164 1.38745 2.50873 3.36774 3.39200 3.44287 3.67410 3.71614 3.99023 4.14330 4.45367 4.55849 4.67181 4.91022 4.92920 5.23283 5.31054 5.68760 5.77384 5.80145 6.25376 6.64727 6.84750 6.92730 6.99217 7.20402 7.36052 7.48524 7.77053 7.99007 8.14955 8.43937 9.02943 9.21304 9.59881 11.05303 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043652 B = 0.003630 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.281614 B = 7710.984380 C = 7957.445984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.547 6.547 14 N -0.742 5.742 15 C 0.095 3.905 16 C 0.176 3.824 17 H 0.127 0.873 18 O -0.544 6.544 19 C -0.250 4.250 20 C 0.044 3.956 21 N -0.470 5.470 22 C 0.017 3.983 23 S 0.137 5.863 24 H 0.093 0.907 25 H 0.014 0.986 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.401 0.599 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.376 0.624 32 H 0.179 0.821 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -2.528 -19.898 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.397 5.397 15 C -0.031 4.031 16 C 0.114 3.886 17 H 0.145 0.855 18 O -0.349 6.349 19 C -0.372 4.372 20 C -0.107 4.107 21 N -0.183 5.183 22 C -0.280 4.280 23 S 0.390 5.610 24 H 0.111 0.889 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.236 0.764 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.196 0.804 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.257 -3.081 -19.876 20.153 hybrid contribution 0.648 -0.050 0.794 1.026 sum -0.610 -3.131 -19.083 19.347 Atomic orbital electron populations 1.21737 0.96435 0.99788 1.01028 1.18867 0.94227 0.96825 0.89168 0.92948 1.21109 1.31150 1.12774 0.89043 0.90882 1.24950 0.95124 0.95054 0.99098 1.69866 1.37081 1.23014 1.23646 0.86507 0.79296 0.79687 0.81636 1.20203 1.21372 1.20212 1.22036 0.78348 0.84270 0.84379 1.90532 1.38020 1.26971 1.86758 1.46184 1.55662 1.32954 1.04945 1.21842 1.00156 0.96504 0.84608 1.20515 0.81139 0.99584 0.87347 0.85534 1.86648 1.17734 1.33924 1.96577 1.26841 1.02372 1.02563 1.05387 1.21771 0.96725 1.00902 0.91313 1.66328 1.28291 1.05097 1.18581 1.28438 0.94592 1.01212 1.03773 1.83992 1.29063 1.25902 1.22085 0.88891 0.96714 0.95068 0.92901 0.76402 0.90838 0.91758 0.77592 0.80414 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.75 2.64 -92.92 -0.24 0.50 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.28 8.37 -34.44 -0.29 -14.57 16 5 H 0.07 2.19 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.63 5.31 -17.82 -0.09 1.53 16 7 N -0.90 -25.19 11.33 55.43 0.63 -24.56 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.71 7.15 -10.99 -0.08 11.63 16 13 O -0.55 -14.19 15.46 5.56 0.09 -14.11 16 14 N -0.74 -12.44 5.34 -60.29 -0.32 -12.76 16 15 C 0.09 1.30 5.32 -4.03 -0.02 1.28 16 16 C 0.18 1.84 3.52 -27.88 -0.10 1.74 16 17 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 18 O -0.54 -5.87 13.00 -35.23 -0.46 -6.33 16 19 C -0.25 -2.47 5.59 -35.92 -0.20 -2.67 16 20 C 0.04 0.45 11.25 -19.18 -0.22 0.24 16 21 N -0.47 -5.12 10.54 -15.75 -0.17 -5.29 16 22 C 0.02 0.14 12.23 51.59 0.63 0.78 16 23 S 0.14 1.13 22.52 -107.50 -2.42 -1.29 16 24 H 0.09 2.35 6.08 -51.93 -0.32 2.03 16 25 H 0.01 0.27 7.56 -51.93 -0.39 -0.12 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.40 6.01 7.77 -40.82 -0.32 5.69 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.38 3.29 8.47 45.56 0.39 3.68 16 32 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 301.04 15.07 4.54 4.54 Total: -1.00 -33.15 301.04 -6.51 -39.65 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.09 Total: 5.55 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.28 Total: -2.23 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.14 Total: -42.61 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.37 Total: -20.44 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.42 Total: -1.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.15 -6.51 -39.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645332016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.589 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds