Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46961 * 2 1 4 4 C 1.36929 * 120.00113 * 85.44301 * 3 2 1 5 5 H 1.07997 * 120.00477 * 323.03192 * 4 3 2 6 6 C 1.38812 * 120.00318 * 143.03728 * 4 3 2 7 7 N 1.31616 * 120.00515 * 157.83350 * 6 4 3 8 8 Si 1.86802 * 119.99522 * 337.83715 * 6 4 3 9 9 H 1.48501 * 109.47427 * 95.17928 * 8 6 4 10 10 H 1.48503 * 109.47109 * 215.17338 * 8 6 4 11 11 H 1.48494 * 109.47395 * 335.17590 * 8 6 4 12 12 C 1.46498 * 119.99589 * 265.43866 * 3 2 1 13 13 C 1.50702 * 109.47292 * 90.00541 * 12 3 2 14 14 N 1.28619 * 124.71247 * 89.99406 * 13 12 3 15 15 C 1.33601 * 115.77274 * 180.02562 * 14 13 12 16 16 C 1.47111 * 123.15797 * 179.97438 * 15 14 13 17 17 O 1.21556 * 120.00256 * 179.97438 * 16 15 14 18 18 O 1.34802 * 119.99565 * 359.97438 * 16 15 14 19 19 C 1.45204 * 116.99609 * 180.02562 * 18 16 15 20 20 C 1.35295 * 113.68682 * 359.97438 * 15 14 13 21 21 S 1.70771 * 124.70501 * 269.70095 * 13 12 3 22 22 H 1.08999 * 109.47327 * 304.68739 * 1 2 3 23 23 H 1.08998 * 109.46932 * 64.68924 * 1 2 3 24 24 H 1.08998 * 109.47368 * 184.68453 * 1 2 3 25 25 H 1.08998 * 109.47382 * 239.99704 * 2 1 3 26 26 H 1.09003 * 109.46864 * 119.99596 * 2 1 3 27 27 H 0.97001 * 120.00268 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47344 * 210.00252 * 12 3 2 29 29 H 1.09002 * 109.47657 * 330.00207 * 12 3 2 30 30 H 1.09012 * 109.47175 * 300.00072 * 19 18 16 31 31 H 1.09003 * 109.47392 * 59.99836 * 19 18 16 32 32 H 1.08996 * 109.47151 * 180.02562 * 19 18 16 33 33 H 1.07999 * 125.59086 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1577 2.0582 1.1821 5 1 1.4404 1.9118 1.9761 6 6 3.2209 2.9327 1.3600 7 7 3.1437 3.8878 2.2622 8 14 4.7614 2.7540 0.3186 9 1 4.6756 3.6631 -0.8524 10 1 5.9526 3.1063 1.1323 11 1 4.8808 1.3506 -0.1520 12 6 2.3576 2.0381 -1.2647 13 6 1.1386 2.7356 -1.8114 14 7 0.8118 3.9518 -1.5501 15 6 -0.3082 4.3901 -2.1318 16 6 -0.8320 5.7521 -1.9450 17 8 -1.8574 6.0908 -2.5031 18 8 -0.1748 6.6244 -1.1548 19 6 -0.7499 7.9505 -1.0161 20 6 -0.9154 3.4640 -2.9090 21 16 0.0033 2.0229 -2.8695 22 1 -0.3634 0.5848 0.8450 23 1 -0.3633 0.4393 -0.9290 24 1 -0.3634 -1.0242 0.0839 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8865 4.4991 2.3863 28 1 3.1482 2.7688 -1.0941 29 1 2.7011 1.2919 -1.9812 30 1 -0.8057 8.4266 -1.9951 31 1 -1.7515 7.8698 -0.5937 32 1 -0.1239 8.5506 -0.3557 33 1 -1.8283 3.6122 -3.4667 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653268286.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = -31.610630 kcal Electronic energy + Delta-G solvation = -18814.452173 eV Core-core repulsion = 15774.727046 eV Total energy + Delta-G solvation = -3039.725127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81073 -40.33587 -38.04034 -37.57123 -33.99435 -32.79418 -30.96353 -29.14840 -28.55851 -26.27434 -25.50144 -23.00850 -22.10209 -20.99912 -20.07755 -18.81324 -18.05707 -17.58973 -17.48778 -17.36084 -16.24918 -15.80644 -15.40464 -15.22441 -14.77165 -14.72407 -14.23444 -14.13333 -13.99499 -13.55817 -13.18895 -13.00396 -12.88950 -12.57956 -12.40262 -12.02944 -11.95028 -11.89396 -11.70192 -11.53708 -10.74172 -10.63175 -10.50756 -9.85686 -8.86635 -8.16009 -5.56801 -0.60942 0.27661 0.54864 0.66665 1.35839 1.44442 1.55259 1.76983 2.04766 2.46475 2.98939 3.16311 3.43693 3.81965 4.08717 4.17049 4.18972 4.25374 4.35248 4.43063 4.58173 4.61964 4.77039 4.83918 4.86129 5.06610 5.11430 5.26831 5.55812 5.94574 6.20650 6.36999 6.80935 6.96413 7.62062 7.99062 9.03261 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.008324 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.570006 B = 3362.830017 C = 4417.719783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.596 5.596 4 C -0.259 4.259 5 H 0.032 0.968 6 C -0.010 4.010 7 N -0.942 5.942 8 Si 0.936 3.064 9 H -0.279 1.279 10 H -0.309 1.309 11 H -0.236 1.236 12 C 0.190 3.810 13 C 0.008 3.992 14 N -0.460 5.460 15 C -0.015 4.015 16 C 0.548 3.452 17 O -0.521 6.521 18 O -0.357 6.357 19 C 0.027 3.973 20 C -0.226 4.226 21 S 0.304 5.696 22 H 0.018 0.982 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.261 0.739 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.124 0.876 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.001 -4.069 -13.641 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 N -0.318 5.318 4 C -0.389 4.389 5 H 0.050 0.950 6 C -0.207 4.207 7 N -0.584 5.584 8 Si 0.764 3.236 9 H -0.207 1.207 10 H -0.238 1.238 11 H -0.158 1.158 12 C 0.061 3.939 13 C -0.275 4.275 14 N -0.175 5.175 15 C -0.149 4.149 16 C 0.391 3.609 17 O -0.412 6.412 18 O -0.272 6.272 19 C -0.065 4.065 20 C -0.369 4.369 21 S 0.562 5.438 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.948 -4.517 -13.775 15.669 hybrid contribution 0.058 1.988 0.602 2.078 sum -5.890 -2.529 -13.173 14.650 Atomic orbital electron populations 1.22315 0.98274 1.01485 1.00517 1.21244 0.93147 0.83200 1.01606 1.44274 1.76765 1.10398 1.00374 1.18405 1.05840 1.21806 0.92866 0.94981 1.26041 1.00798 0.95958 0.97940 1.70025 1.32431 1.16791 1.39167 0.85971 0.79587 0.80124 0.77923 1.20657 1.23774 1.15846 1.20357 0.89538 0.95632 0.88416 1.29029 1.05461 0.93119 0.99855 1.66979 1.14453 1.15004 1.21096 1.19492 0.96078 0.94901 1.04479 1.20115 0.80854 0.84600 0.75310 1.90789 1.23996 1.78583 1.47864 1.86772 1.52888 1.25538 1.62032 1.23643 1.00394 0.78658 1.03844 1.26950 1.07589 0.97899 1.04503 1.82089 1.13161 1.10542 1.37960 0.96286 0.92750 0.90248 0.89746 0.92899 0.93004 0.92586 0.86644 0.90595 0.91336 0.85795 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 10.22 71.98 0.74 -4.38 16 2 C 0.13 4.43 6.44 86.38 0.56 4.99 16 3 N -0.60 -26.08 2.08 -706.34 -1.47 -27.55 16 4 C -0.26 -14.50 9.93 84.03 0.83 -13.66 16 5 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 6 C -0.01 -0.57 5.31 84.86 0.45 -0.12 16 7 N -0.94 -60.11 13.97 21.65 0.30 -59.81 16 8 Si 0.94 44.91 25.01 68.60 1.72 46.62 16 9 H -0.28 -13.18 6.66 99.48 0.66 -12.52 16 10 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 11 H -0.24 -9.97 7.11 99.48 0.71 -9.27 16 12 C 0.19 7.48 5.11 85.63 0.44 7.91 16 13 C 0.01 0.31 6.91 88.58 0.61 0.92 16 14 N -0.46 -20.49 10.60 -180.90 -1.92 -22.41 16 15 C -0.02 -0.59 6.71 40.52 0.27 -0.32 16 16 C 0.55 21.27 7.94 70.15 0.56 21.83 16 17 O -0.52 -19.57 16.51 19.65 0.32 -19.24 16 18 O -0.36 -14.01 10.50 -57.13 -0.60 -14.61 16 19 C 0.03 0.74 10.57 113.37 1.20 1.94 16 20 C -0.23 -6.58 10.62 67.14 0.71 -5.87 16 21 S 0.30 7.71 20.90 -56.49 -1.18 6.53 16 22 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.05 1.53 5.94 -2.39 -0.01 1.52 16 24 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.08 2.15 7.84 -2.39 -0.02 2.13 16 26 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 27 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 28 H 0.06 2.56 3.16 -2.39 -0.01 2.55 16 29 H 0.12 3.36 7.86 -2.39 -0.02 3.34 16 30 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.21 4.79 8.03 -2.91 -0.02 4.76 16 Total: -1.00 -76.09 298.16 4.62 -71.47 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.08 Total: 5.77 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.37 Total: 13.24 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.08 Total: -109.77 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.28 Total: -33.86 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.72 Total: 46.62 kcal Atomic # 16 Polarization: 7.71 SS G_CDS: -1.18 Total: 6.53 kcal Total: -76.09 4.62 -71.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653268286.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.855 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds