Wall clock time and date at job start Mon Mar 30 2020 00:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21635 * 120.00108 * 0.02562 * 16 15 14 18 18 C 1.47196 * 119.99578 * 180.02562 * 16 15 14 19 19 C 1.44429 * 123.45745 * 179.73093 * 18 16 15 20 20 C 1.32770 * 113.08239 * 179.80851 * 19 18 16 21 21 S 1.75506 * 110.57569 * 0.44047 * 20 19 18 22 22 C 1.36010 * 123.46307 * 0.02562 * 18 16 15 23 23 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 26 26 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 27 27 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 28 28 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 29 29 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 30 30 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 31 31 H 1.08007 * 123.45675 * 359.97438 * 19 18 16 32 32 H 1.07996 * 124.71520 * 180.17848 * 20 19 18 33 33 H 1.07993 * 124.59221 * 0.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3967 -6.2156 2.2456 18 6 -0.5054 -4.7086 4.0215 19 6 -1.3556 -5.5117 4.8690 20 6 -1.6307 -4.9307 6.0307 21 16 -0.8625 -3.3558 6.1299 22 6 -0.1677 -3.5161 4.5818 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.9722 -3.2261 -1.8952 26 1 3.0428 -4.9390 -1.4164 27 1 1.3838 -4.5509 -3.0904 28 1 0.3131 -4.9201 -0.0155 29 1 1.7553 -5.6711 0.7087 30 1 1.0055 -3.4635 2.3028 31 1 -1.7270 -6.4861 4.5877 32 1 -2.2455 -5.3649 6.8051 33 1 0.4557 -2.7714 4.1094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700782007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:16 Heat of formation + Delta-G solvation = -42.640305 kcal Electronic energy + Delta-G solvation = -18268.475109 eV Core-core repulsion = 15228.271699 eV Total energy + Delta-G solvation = -3040.203410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53432 -37.28876 -36.49040 -34.87384 -33.49517 -31.48655 -29.80654 -28.21496 -25.67721 -24.26845 -23.59246 -21.07676 -20.11412 -18.85250 -18.06116 -17.43616 -16.76930 -16.57304 -15.56308 -14.95194 -14.65354 -14.30584 -13.86540 -13.48737 -13.35960 -13.00312 -12.89041 -12.76470 -12.59013 -12.35684 -11.92965 -11.41575 -11.07974 -10.90218 -10.85683 -10.58398 -10.15156 -9.81195 -9.59029 -9.36032 -9.02406 -9.00055 -8.63113 -8.32119 -7.06387 -5.83625 -3.14427 0.86762 1.58252 1.95773 2.13080 3.36785 3.42121 3.43641 3.60623 3.70624 4.50205 4.84551 4.92538 5.22711 5.31996 5.40111 5.46419 5.53001 5.57215 5.85620 5.89349 6.02008 6.04719 6.11685 6.30107 6.38727 6.50354 6.74293 6.92613 7.59378 7.97737 8.20588 8.33203 8.61421 9.45252 10.00690 10.37418 11.37652 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.005945 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.494154 B = 4708.875950 C = 6254.525863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.066 0.934 12 C 0.060 3.940 13 O -0.560 6.560 14 C 0.119 3.881 15 N -0.706 5.706 16 C 0.573 3.427 17 O -0.552 6.552 18 C -0.153 4.153 19 C -0.084 4.084 20 C -0.244 4.244 21 S 0.176 5.824 22 C -0.201 4.201 23 H 0.257 0.743 24 H 0.389 0.611 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.364 0.636 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.407 0.593 31 H 0.152 0.848 32 H 0.167 0.833 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 -8.450 9.291 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.381 4.381 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.021 4.021 13 O -0.363 6.363 14 C -0.005 4.005 15 N -0.357 5.357 16 C 0.358 3.642 17 O -0.432 6.432 18 C -0.171 4.171 19 C -0.113 4.113 20 C -0.378 4.378 21 S 0.440 5.560 22 C -0.339 4.339 23 H 0.067 0.933 24 H 0.224 0.776 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.209 0.791 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.244 0.756 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.793 -7.766 10.657 13.210 hybrid contribution 0.645 0.260 -1.728 1.862 sum 1.438 -7.506 8.929 11.753 Atomic orbital electron populations 1.69674 1.05070 1.25870 1.56600 1.24751 0.95450 0.97633 1.02587 0.86305 0.78539 0.83662 0.77814 1.21309 1.21687 1.21264 1.19176 0.90880 0.84063 1.43968 0.91244 1.42372 1.06068 0.99020 1.88049 1.20600 0.95023 0.87039 0.91963 0.91669 1.23019 0.86518 0.97243 0.95355 1.86574 1.32147 1.91683 1.25920 1.21567 0.99580 0.96857 0.82517 1.45852 1.50368 1.21467 1.18054 1.17570 0.78488 0.84262 0.83905 1.90744 1.57503 1.22432 1.72498 1.20400 1.04244 0.95368 0.97087 1.21132 0.97199 1.00797 0.92176 1.25464 1.09546 0.99909 1.02912 1.82999 1.44035 1.16238 1.12685 1.25809 1.05713 1.01297 1.01129 0.93347 0.77641 0.93322 0.95498 0.79149 0.90457 0.92005 0.75582 0.83049 0.81569 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.04 13.06 55.49 0.72 -26.32 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 9 N -0.71 -16.91 4.51 -53.43 -0.24 -17.15 16 10 C 0.16 3.14 2.84 -67.93 -0.19 2.95 16 11 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 12 C 0.06 1.04 6.86 37.16 0.25 1.30 16 13 O -0.56 -10.06 12.64 -35.23 -0.45 -10.51 16 14 C 0.12 2.17 5.12 -4.04 -0.02 2.15 16 15 N -0.71 -12.63 5.36 -61.46 -0.33 -12.96 16 16 C 0.57 10.52 7.79 -12.62 -0.10 10.42 16 17 O -0.55 -11.59 16.80 5.25 0.09 -11.51 16 18 C -0.15 -2.39 5.98 -104.62 -0.63 -3.02 16 19 C -0.08 -1.13 10.10 -39.02 -0.39 -1.52 16 20 C -0.24 -2.67 11.12 28.86 0.32 -2.35 16 21 S 0.18 1.93 23.02 -107.50 -2.48 -0.54 16 22 C -0.20 -2.77 10.38 29.93 0.31 -2.46 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.39 10.31 7.80 -40.82 -0.32 9.99 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.36 4.70 9.12 45.56 0.42 5.12 16 28 H 0.08 1.59 7.39 -51.93 -0.38 1.21 16 29 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.41 7.18 6.64 -40.82 -0.27 6.91 16 31 H 0.15 1.96 8.06 -52.48 -0.42 1.53 16 32 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.17 2.34 7.01 -52.49 -0.37 1.97 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -32.05 304.59 -6.81 -38.86 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -3.00 Total: 18.56 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.69 Total: 0.52 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.15 Total: -56.43 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.36 Total: -22.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.48 Total: -0.54 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.05 -6.81 -38.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700782007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.783 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds