Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09004 * 109.47372 * 34.71943 * 10 9 7 12 12 C 1.52997 * 109.47036 * 274.72222 * 10 9 7 13 13 O 1.42903 * 109.47059 * 295.00261 * 12 10 9 14 14 C 1.52999 * 109.46963 * 154.72381 * 10 9 7 15 15 N 1.46500 * 109.47226 * 304.99288 * 14 10 9 16 16 C 1.34776 * 119.99923 * 180.02562 * 15 14 10 17 17 O 1.21635 * 120.00108 * 0.02562 * 16 15 14 18 18 C 1.47196 * 119.99578 * 180.02562 * 16 15 14 19 19 C 1.44429 * 123.45745 * 179.73093 * 18 16 15 20 20 C 1.32770 * 113.08239 * 179.80851 * 19 18 16 21 21 S 1.75506 * 110.57569 * 0.44047 * 20 19 18 22 22 C 1.36010 * 123.46307 * 0.02562 * 18 16 15 23 23 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.47241 * 55.00267 * 12 10 9 26 26 H 1.09002 * 109.47280 * 175.00361 * 12 10 9 27 27 H 0.96700 * 113.99965 * 180.02562 * 13 12 10 28 28 H 1.08995 * 109.47415 * 64.99597 * 14 10 9 29 29 H 1.09008 * 109.47087 * 184.99936 * 14 10 9 30 30 H 0.96998 * 120.00120 * 0.02562 * 15 14 10 31 31 H 1.08007 * 123.45675 * 359.97438 * 19 18 16 32 32 H 1.07996 * 124.71520 * 180.17848 * 20 19 18 33 33 H 1.07993 * 124.59221 * 0.02562 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9685 -3.5476 0.5965 12 6 2.4223 -4.0429 -1.4277 13 8 1.2283 -4.2995 -2.1697 14 6 1.1804 -4.7490 0.6220 15 7 0.7334 -4.3257 1.9514 16 6 -0.0559 -5.1342 2.6861 17 8 -0.3967 -6.2156 2.2456 18 6 -0.5054 -4.7086 4.0215 19 6 -1.3556 -5.5117 4.8690 20 6 -1.6307 -4.9307 6.0307 21 16 -0.8625 -3.3558 6.1299 22 6 -0.1677 -3.5161 4.5818 23 1 -0.4850 0.8401 -0.0004 24 1 0.3555 -2.3880 0.0005 25 1 2.9722 -3.2261 -1.8952 26 1 3.0428 -4.9390 -1.4164 27 1 1.3838 -4.5509 -3.0904 28 1 0.3131 -4.9201 -0.0155 29 1 1.7553 -5.6711 0.7087 30 1 1.0055 -3.4635 2.3028 31 1 -1.7270 -6.4861 4.5877 32 1 -2.2455 -5.3649 6.8051 33 1 0.4557 -2.7714 4.1094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700782007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -68.184551 kcal Electronic energy + Delta-G solvation = -18269.582790 eV Core-core repulsion = 15228.271699 eV Total energy + Delta-G solvation = -3041.311091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91800 -38.72636 -37.68345 -36.40127 -35.22742 -33.22477 -31.03880 -29.84440 -27.02160 -25.74459 -25.26973 -22.27271 -21.66650 -20.13036 -19.45884 -18.91904 -18.17021 -17.94278 -17.09880 -16.45384 -16.20169 -15.81525 -15.34247 -15.02502 -14.83599 -14.51485 -14.12230 -13.96156 -13.85548 -13.52663 -13.36214 -13.02356 -12.74283 -12.63429 -12.29471 -12.07374 -11.91401 -11.73556 -11.07794 -10.89765 -10.72414 -10.14660 -9.95159 -9.33099 -9.01580 -7.89951 -5.19861 -0.20585 0.63454 0.97977 1.02859 1.50040 1.51835 1.57934 2.24206 2.37494 2.57661 3.41891 3.60688 3.84484 3.89345 3.97320 4.05806 4.34285 4.42448 4.46320 4.55271 4.60751 4.85347 4.85675 4.98823 5.15023 5.21044 5.29522 5.47036 5.54710 6.28079 6.54875 7.06565 7.19001 7.36256 8.07967 8.34102 9.32475 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.015087 B = 0.005945 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.494154 B = 4708.875950 C = 6254.525863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.080 0.920 12 C 0.065 3.935 13 O -0.584 6.584 14 C 0.129 3.871 15 N -0.705 5.705 16 C 0.568 3.432 17 O -0.587 6.587 18 C -0.182 4.182 19 C -0.109 4.109 20 C -0.227 4.227 21 S 0.240 5.760 22 C -0.216 4.216 23 H 0.249 0.751 24 H 0.372 0.628 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.385 0.615 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.408 0.592 31 H 0.150 0.850 32 H 0.202 0.798 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 -8.482 10.746 13.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.229 1.229 6 H -0.200 1.200 7 C -0.370 4.370 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.052 3.948 11 H 0.098 0.902 12 C -0.016 4.016 13 O -0.391 6.391 14 C 0.005 3.995 15 N -0.356 5.356 16 C 0.355 3.645 17 O -0.470 6.470 18 C -0.200 4.200 19 C -0.138 4.138 20 C -0.362 4.362 21 S 0.506 5.494 22 C -0.354 4.354 23 H 0.057 0.943 24 H 0.204 0.796 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.234 0.766 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.245 0.755 31 H 0.167 0.833 32 H 0.219 0.781 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.890 -7.828 12.105 14.539 hybrid contribution 0.338 0.209 -2.123 2.160 sum 2.228 -7.618 9.982 12.753 Atomic orbital electron populations 1.69847 1.06662 1.25867 1.59251 1.25489 0.96123 1.00822 1.03824 0.85284 0.77105 0.79581 0.78140 1.20897 1.22896 1.20017 1.19585 0.91490 0.84792 1.41183 0.90038 1.42471 1.05329 1.00193 1.88245 1.20856 0.95049 0.85296 0.93636 0.90181 1.22866 0.86536 0.98623 0.93531 1.86528 1.32905 1.91862 1.27819 1.21424 0.98533 0.97291 0.82287 1.45847 1.50393 1.21450 1.17872 1.18057 0.77820 0.83715 0.84898 1.90705 1.58831 1.23849 1.73589 1.20346 1.06380 0.96866 0.96390 1.21156 0.98298 1.01219 0.93119 1.25897 1.08246 0.99580 1.02463 1.82805 1.41870 1.15256 1.09472 1.25960 1.05820 1.00630 1.03038 0.94267 0.79647 0.94400 0.91567 0.76649 0.93088 0.90288 0.75474 0.83260 0.78058 0.81105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.62 13.06 21.65 0.28 -57.33 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 3 Si 0.97 44.18 29.55 68.60 2.03 46.21 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.24 -12.30 9.93 84.03 0.83 -11.47 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.33 4.51 -322.94 -1.46 -35.79 16 10 C 0.16 5.98 2.84 44.99 0.13 6.11 16 11 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 12 C 0.07 2.15 6.86 71.98 0.49 2.64 16 13 O -0.58 -20.52 12.64 -148.98 -1.88 -22.40 16 14 C 0.13 4.71 5.12 86.38 0.44 5.15 16 15 N -0.71 -25.67 5.36 -466.59 -2.50 -28.17 16 16 C 0.57 21.39 7.79 86.60 0.67 22.07 16 17 O -0.59 -25.42 16.80 -4.14 -0.07 -25.49 16 18 C -0.18 -5.68 5.98 -19.87 -0.12 -5.80 16 19 C -0.11 -2.87 10.10 22.67 0.23 -2.64 16 20 C -0.23 -4.37 11.12 66.64 0.74 -3.63 16 21 S 0.24 4.66 23.02 -56.49 -1.30 3.36 16 22 C -0.22 -5.80 10.38 67.30 0.70 -5.11 16 23 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.37 20.18 7.80 -92.71 -0.72 19.46 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.39 9.46 9.12 -74.06 -0.68 8.79 16 28 H 0.05 2.14 7.39 -2.39 -0.02 2.13 16 29 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 30 H 0.41 14.65 6.64 -92.71 -0.62 14.03 16 31 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.20 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.17 4.59 7.01 -2.91 -0.02 4.57 16 Total: -1.00 -69.78 304.59 -1.16 -70.94 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -0.85 Total: 44.70 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.59 Total: 3.98 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -3.67 Total: -121.29 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.95 Total: -47.89 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Total: -69.78 -1.16 -70.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700782007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.753 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds