Wall clock time and date at job start Mon Mar 30 2020 00:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21283 * 120.00677 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99865 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47113 * 344.99444 * 15 13 12 17 17 F 1.39903 * 109.47324 * 104.99333 * 15 13 12 18 18 C 1.53003 * 109.47231 * 224.99592 * 15 13 12 19 19 F 1.39896 * 109.46906 * 59.99680 * 18 15 13 20 20 F 1.39904 * 109.47027 * 179.97438 * 18 15 13 21 21 F 1.39896 * 109.47073 * 299.99865 * 18 15 13 22 22 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 23 23 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 24 24 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 25 25 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 26 26 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 27 27 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 28 28 H 1.09003 * 113.46756 * 321.86183 * 22 9 7 29 29 H 1.09002 * 113.46950 * 92.29471 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5356 -0.5211 1.7857 15 6 6.6466 -1.0096 3.9165 16 1 5.6412 -1.1419 4.3165 17 9 7.4455 -2.0939 4.2950 18 6 7.2486 0.2845 4.4677 19 9 6.4496 1.3687 4.0892 20 9 7.3071 0.2139 5.8638 21 9 8.5388 0.4543 3.9544 22 6 4.4119 -2.2308 -0.3351 23 1 -0.4850 -0.8371 0.0714 24 1 4.6555 0.1232 -1.2580 25 1 4.2793 0.6479 0.4390 26 1 6.3880 -1.2388 -0.1697 27 1 4.7057 -1.6541 2.2664 28 1 4.2436 -3.1278 0.2608 29 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714937217.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:40 Heat of formation + Delta-G solvation = -163.328643 kcal Electronic energy + Delta-G solvation = -21461.046177 eV Core-core repulsion = 17307.539412 eV Total energy + Delta-G solvation = -4153.506765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.51982 -48.65602 -47.91559 -47.72482 -40.10644 -38.23673 -33.91112 -32.38941 -31.13236 -28.00468 -25.54509 -24.84125 -22.70097 -21.22889 -19.80412 -19.23611 -18.95970 -18.56224 -17.65926 -17.51826 -16.72045 -16.00696 -15.44333 -14.92782 -14.73655 -14.69960 -14.61032 -14.28336 -14.20964 -13.98336 -13.95100 -13.84541 -13.67401 -13.18422 -13.01161 -12.22193 -11.83936 -11.52331 -11.20652 -10.68192 -10.46503 -10.21534 -9.69731 -9.32385 -8.98546 -8.84164 -7.30614 -6.43583 -3.36616 1.75866 2.14575 2.60854 3.15848 3.34748 3.36632 3.57413 3.58912 3.61529 4.03060 4.23734 4.49266 4.53910 4.55907 4.90762 5.29507 5.63146 5.72632 5.93839 6.08053 6.15153 6.20809 6.64843 6.93565 7.26122 7.82019 8.11748 8.84939 9.37298 10.21179 11.08750 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.006021 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.037444 B = 4649.286375 C = 5064.115285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.020 4.020 3 Si 1.068 2.932 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.312 4.312 8 H 0.084 0.916 9 N -0.628 5.628 10 C 0.086 3.914 11 C 0.093 3.907 12 N -0.673 5.673 13 C 0.495 3.505 14 O -0.503 6.503 15 C 0.038 3.962 16 H 0.148 0.852 17 F -0.155 7.155 18 C 0.448 3.552 19 F -0.164 7.164 20 F -0.170 7.170 21 F -0.156 7.156 22 C 0.116 3.884 23 H 0.262 0.738 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.110 0.890 27 H 0.412 0.588 28 H 0.052 0.948 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.992 -2.395 8.626 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.220 4.220 3 Si 0.901 3.099 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.438 4.438 8 H 0.102 0.898 9 N -0.357 5.357 10 C -0.041 4.041 11 C -0.013 4.013 12 N -0.323 5.323 13 C 0.275 3.725 14 O -0.378 6.378 15 C -0.003 4.003 16 H 0.165 0.835 17 F -0.135 7.135 18 C 0.392 3.608 19 F -0.145 7.145 20 F -0.151 7.151 21 F -0.137 7.137 22 C -0.011 4.011 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.249 0.751 28 H 0.070 0.930 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.221 -0.464 8.143 16.393 hybrid contribution -0.196 -1.754 0.404 1.810 sum 14.025 -2.218 8.546 16.573 Atomic orbital electron populations 1.70928 1.05385 1.29569 1.51279 1.25721 0.96382 1.00979 0.98889 0.83713 0.73822 0.76053 0.76311 1.22124 1.22150 1.21309 1.20105 0.78680 0.95808 1.49231 0.89836 1.46165 1.02472 1.01506 1.85577 1.23280 0.87570 0.94228 0.99012 1.22683 0.99529 1.00247 0.78798 1.45438 1.15670 1.63060 1.08115 1.19941 0.84433 0.80277 0.87855 1.90826 1.35561 1.44254 1.67123 1.22778 0.97677 0.83173 0.96675 0.83482 1.93007 1.75197 1.53532 1.91764 1.20278 0.77969 0.86116 0.76424 1.93283 1.73320 1.56946 1.90947 1.93247 1.96295 1.96417 1.29173 1.93301 1.38155 1.95839 1.86381 1.22701 0.86818 0.93513 0.98091 0.92794 0.92254 0.92576 0.87245 0.75121 0.92991 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.70 55.49 0.76 -27.57 15 2 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 15 3 Si 1.07 25.97 25.13 -169.99 -4.27 21.70 15 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 15 5 H -0.29 -6.75 6.65 56.52 0.38 -6.37 15 6 H -0.29 -6.52 6.13 56.52 0.35 -6.18 15 7 C -0.31 -8.40 11.08 -15.06 -0.17 -8.57 15 8 H 0.08 2.37 8.05 -52.49 -0.42 1.94 15 9 N -0.63 -14.04 3.70 -184.60 -0.68 -14.72 15 10 C 0.09 1.69 5.54 -8.36 -0.05 1.65 15 11 C 0.09 1.50 4.61 -67.67 -0.31 1.18 15 12 N -0.67 -9.67 5.40 -53.48 -0.29 -9.96 15 13 C 0.49 7.05 6.90 -10.99 -0.08 6.97 15 14 O -0.50 -8.68 15.20 5.55 0.08 -8.60 15 15 C 0.04 0.43 3.78 -27.88 -0.11 0.32 15 16 H 0.15 1.08 8.00 -51.93 -0.42 0.67 15 17 F -0.15 -1.80 17.03 2.25 0.04 -1.76 15 18 C 0.45 5.51 2.86 37.16 0.11 5.62 15 19 F -0.16 -2.19 17.02 2.25 0.04 -2.15 15 20 F -0.17 -1.92 17.30 2.25 0.04 -1.88 15 21 F -0.16 -2.20 15.95 2.25 0.04 -2.17 15 22 C 0.12 1.99 8.44 -8.51 -0.07 1.92 15 23 H 0.26 7.85 8.73 -40.82 -0.36 7.50 15 24 H 0.06 1.15 7.73 -51.93 -0.40 0.75 15 25 H 0.06 1.18 4.65 -51.93 -0.24 0.94 15 26 H 0.11 1.64 7.45 -51.93 -0.39 1.25 15 27 H 0.41 5.36 8.65 -40.82 -0.35 5.00 15 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -31.92 268.57 -3.27 -35.18 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -2.30 Total: -0.56 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.77 Total: 8.43 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.21 Total: -52.24 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.15 Total: -7.96 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.27 Total: 21.70 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.92 -3.27 -35.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714937217.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.145 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds