Wall clock time and date at job start Mon Mar 30 2020 00:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99788 * 2 1 4 4 H 1.48493 * 109.47463 * 355.36427 * 3 2 1 5 5 H 1.48510 * 109.46810 * 115.36392 * 3 2 1 6 6 H 1.48498 * 109.47153 * 235.35658 * 3 2 1 7 7 C 1.38812 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 352.25902 * 7 2 1 9 9 N 1.36935 * 119.99962 * 172.26235 * 7 2 1 10 10 C 1.47070 * 136.05691 * 6.38666 * 9 7 2 11 11 C 1.53762 * 87.88570 * 152.96947 * 10 9 7 12 12 N 1.46500 * 114.39503 * 272.68209 * 11 10 9 13 13 C 1.34775 * 119.99438 * 248.58795 * 12 11 10 14 14 O 1.21283 * 120.00677 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99865 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47113 * 344.99444 * 15 13 12 17 17 F 1.39903 * 109.47324 * 104.99333 * 15 13 12 18 18 C 1.53003 * 109.47231 * 224.99592 * 15 13 12 19 19 F 1.39896 * 109.46906 * 59.99680 * 18 15 13 20 20 F 1.39904 * 109.47027 * 179.97438 * 18 15 13 21 21 F 1.39896 * 109.47073 * 299.99865 * 18 15 13 22 22 C 1.47065 * 136.05778 * 186.76980 * 9 7 2 23 23 H 0.97005 * 119.99783 * 184.87568 * 1 2 3 24 24 H 1.08996 * 113.47141 * 267.70033 * 10 9 7 25 25 H 1.09002 * 113.46180 * 38.14777 * 10 9 7 26 26 H 1.09000 * 114.26213 * 139.79217 * 11 10 9 27 27 H 0.96999 * 120.00177 * 68.58488 * 12 11 10 28 28 H 1.09003 * 113.46756 * 321.86183 * 22 9 7 29 29 H 1.09002 * 113.46950 * 92.29471 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2891 2.7441 -0.1131 5 1 3.0170 1.7465 1.2652 6 1 3.1868 1.6485 -1.1518 7 6 2.0102 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1250 9 7 3.3702 -1.2075 -0.1602 10 6 4.4312 -0.1920 -0.2390 11 6 5.4059 -1.2505 0.3030 12 7 5.4675 -1.3241 1.7649 13 6 6.5829 -0.9333 2.4128 14 8 7.5356 -0.5211 1.7857 15 6 6.6466 -1.0096 3.9165 16 1 5.6412 -1.1419 4.3165 17 9 7.4455 -2.0939 4.2950 18 6 7.2486 0.2845 4.4677 19 9 6.4496 1.3687 4.0892 20 9 7.3071 0.2139 5.8638 21 9 8.5388 0.4543 3.9544 22 6 4.4119 -2.2308 -0.3351 23 1 -0.4850 -0.8371 0.0714 24 1 4.6555 0.1232 -1.2580 25 1 4.2793 0.6479 0.4390 26 1 6.3880 -1.2388 -0.1697 27 1 4.7057 -1.6541 2.2664 28 1 4.2436 -3.1278 0.2608 29 1 4.6311 -2.4530 -1.3795 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714937217.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:40 Heat of formation + Delta-G solvation = -187.275873 kcal Electronic energy + Delta-G solvation = -21462.084606 eV Core-core repulsion = 17307.539412 eV Total energy + Delta-G solvation = -4154.545195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.48637 -49.58116 -48.86255 -48.72370 -41.37855 -39.64303 -35.33159 -34.26668 -32.18654 -29.75100 -27.04204 -25.99091 -24.27738 -22.40681 -21.32428 -20.23869 -19.94525 -19.62480 -19.46693 -18.60066 -17.83724 -17.17889 -16.94041 -16.12585 -15.93748 -15.74677 -15.67891 -15.61084 -15.32303 -15.25722 -15.16581 -14.97698 -14.94423 -14.86775 -14.06155 -13.61614 -13.33043 -12.83577 -12.74503 -12.46778 -12.06964 -11.39694 -11.36868 -11.28964 -10.98653 -10.20004 -9.21763 -8.62286 -5.45846 0.72520 1.10159 1.40562 1.46519 1.57039 1.66167 2.21790 2.53058 2.63431 2.69467 2.92785 3.06382 3.25512 3.31133 3.51291 3.66966 4.23588 4.32006 4.61198 4.65862 4.71533 4.82796 5.18837 5.34970 5.96923 6.12499 6.70215 6.71918 7.33803 8.26277 8.93217 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.006021 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.037444 B = 4649.286375 C = 5064.115285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 1.103 2.897 4 H -0.310 1.310 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.286 4.286 8 H 0.058 0.942 9 N -0.655 5.655 10 C 0.074 3.926 11 C 0.117 3.883 12 N -0.671 5.671 13 C 0.496 3.504 14 O -0.534 6.534 15 C 0.047 3.953 16 H 0.191 0.809 17 F -0.155 7.155 18 C 0.446 3.554 19 F -0.171 7.171 20 F -0.163 7.163 21 F -0.169 7.169 22 C 0.119 3.881 23 H 0.248 0.752 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.129 0.871 27 H 0.420 0.580 28 H 0.065 0.935 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.900 -2.772 9.132 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.272 4.272 3 Si 0.930 3.070 4 H -0.239 1.239 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.413 4.413 8 H 0.076 0.924 9 N -0.385 5.385 10 C -0.052 4.052 11 C 0.010 3.990 12 N -0.322 5.322 13 C 0.278 3.722 14 O -0.410 6.410 15 C 0.006 3.994 16 H 0.208 0.792 17 F -0.135 7.135 18 C 0.391 3.609 19 F -0.152 7.152 20 F -0.144 7.144 21 F -0.151 7.151 22 C -0.006 4.006 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.147 0.853 27 H 0.258 0.742 28 H 0.084 0.916 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.187 -0.886 8.662 18.380 hybrid contribution -0.710 -1.747 0.253 1.903 sum 15.477 -2.633 8.915 18.054 Atomic orbital electron populations 1.71020 1.06802 1.28817 1.55225 1.26799 0.96368 1.04177 0.99832 0.83304 0.73157 0.72489 0.78007 1.23898 1.20106 1.18899 1.19975 0.81060 0.94423 1.45863 0.92394 1.46203 1.01642 1.04694 1.85952 1.23510 0.87616 0.94426 0.99632 1.22403 0.99340 0.97470 0.79747 1.45432 1.16151 1.62992 1.07608 1.20353 0.83646 0.79140 0.89076 1.90818 1.36552 1.45379 1.68242 1.22824 0.99608 0.82458 0.94464 0.79197 1.93015 1.75517 1.53455 1.91535 1.20443 0.77399 0.86370 0.76738 1.93270 1.73405 1.57467 1.91063 1.93263 1.96220 1.96377 1.28557 1.93276 1.39210 1.95950 1.86633 1.22898 0.84907 0.93297 0.99533 0.94230 0.91292 0.93615 0.85332 0.74238 0.91628 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.74 13.70 21.65 0.30 -60.44 15 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 15 3 Si 1.10 51.87 25.13 68.60 1.72 53.59 15 4 H -0.31 -15.33 7.11 99.48 0.71 -14.62 15 5 H -0.27 -11.85 6.65 99.48 0.66 -11.19 15 6 H -0.26 -11.25 6.13 99.48 0.61 -10.64 15 7 C -0.29 -15.26 11.08 84.03 0.93 -14.33 15 8 H 0.06 3.33 8.05 -2.91 -0.02 3.30 15 9 N -0.66 -27.87 3.70 -737.96 -2.73 -30.60 15 10 C 0.07 2.70 5.54 83.27 0.46 3.17 15 11 C 0.12 3.33 4.61 45.55 0.21 3.54 15 12 N -0.67 -16.99 5.40 -441.51 -2.38 -19.37 15 13 C 0.50 12.59 6.90 87.66 0.61 13.20 15 14 O -0.53 -17.03 15.20 -3.04 -0.05 -17.08 15 15 C 0.05 0.90 3.78 29.85 0.11 1.01 15 16 H 0.19 1.97 8.00 -2.39 -0.02 1.95 15 17 F -0.15 -3.14 17.03 44.97 0.77 -2.37 15 18 C 0.45 9.90 2.86 71.98 0.21 10.11 15 19 F -0.17 -4.18 17.02 44.97 0.77 -3.42 15 20 F -0.16 -3.28 17.30 44.97 0.78 -2.50 15 21 F -0.17 -4.51 15.95 44.97 0.72 -3.80 15 22 C 0.12 3.70 8.44 83.18 0.70 4.41 15 23 H 0.25 15.49 8.73 -92.70 -0.81 14.68 15 24 H 0.07 2.42 7.73 -2.39 -0.02 2.40 15 25 H 0.05 1.79 4.65 -2.39 -0.01 1.77 15 26 H 0.13 3.31 7.45 -2.39 -0.02 3.30 15 27 H 0.42 9.45 8.65 -92.71 -0.80 8.64 15 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -69.18 268.57 3.82 -65.36 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.24 Total: 3.56 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 3.70 Total: 17.05 kcal Atomic # 7 Polarization: -105.60 SS G_CDS: -4.81 Total: -110.41 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.05 Total: -17.08 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 3.03 Total: -12.09 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.72 Total: 53.59 kcal Total: -69.18 3.82 -65.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714937217.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.915 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds