Wall clock time and date at job start Mon Mar 30 2020 00:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30586 * 125.42757 * 2 1 4 4 N 1.40419 * 107.01308 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.83754 * 179.97438 * 4 3 2 6 6 C 1.35070 * 106.33110 * 0.02562 * 4 3 2 7 7 S 1.76204 * 126.09035 * 180.02562 * 6 4 3 8 8 C 1.80998 * 99.99963 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47041 * 179.97438 * 8 7 6 10 10 O 1.21287 * 120.00054 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00185 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99671 * 0.02562 * 11 9 8 13 13 C 1.46494 * 119.99903 * 180.02562 * 11 9 8 14 14 C 1.50702 * 109.47177 * 90.00273 * 13 11 9 15 15 H 1.07995 * 119.99978 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99865 * 179.97438 * 14 13 11 17 17 N 1.31513 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99897 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47024 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46679 * 120.00215 * 18 16 14 21 21 H 1.48502 * 109.47244 * 239.99996 * 18 16 14 22 22 N 1.31654 * 107.82630 * 359.97438 * 6 4 3 23 23 H 1.09002 * 109.47411 * 269.97403 * 1 2 3 24 24 H 1.08999 * 109.47323 * 29.98282 * 1 2 3 25 25 H 1.09012 * 109.46929 * 149.98070 * 1 2 3 26 26 H 1.08997 * 109.47210 * 300.00117 * 8 7 6 27 27 H 1.08995 * 109.46992 * 60.00149 * 8 7 6 28 28 H 1.08996 * 109.47141 * 90.00140 * 12 11 9 29 29 H 1.09007 * 109.46676 * 210.00038 * 12 11 9 30 30 H 1.09000 * 109.47141 * 329.99855 * 12 11 9 31 31 H 1.09003 * 109.46806 * 209.99772 * 13 11 9 32 32 H 1.08993 * 109.47274 * 329.99892 * 13 11 9 33 33 H 0.97001 * 120.00027 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0641 0.0000 4 7 3.5963 0.6205 -0.0006 5 1 4.3933 1.1734 -0.0011 6 6 3.5472 -0.7293 -0.0015 7 16 4.9324 -1.8183 -0.0019 8 6 4.0778 -3.4139 -0.0024 9 6 5.0931 -4.5275 -0.0034 10 8 6.2779 -4.2680 -0.0034 11 7 4.6846 -5.8119 -0.0044 12 6 3.2535 -6.1253 -0.0051 13 6 5.6717 -6.8944 -0.0049 14 6 6.0096 -7.2666 1.4158 15 1 5.5368 -6.7484 2.2369 16 6 6.9225 -8.2689 1.6673 17 7 7.4979 -8.9004 0.6674 18 14 7.3420 -8.7298 3.4283 19 1 6.5638 -7.8767 4.3620 20 1 7.0012 -10.1563 3.6610 21 1 8.7940 -8.5233 3.6616 22 7 2.2800 -1.0865 -0.0009 23 1 -0.3634 -0.0005 1.0277 24 1 -0.3634 0.8901 -0.5136 25 1 -0.3633 -0.8899 -0.5142 26 1 3.4533 -3.4918 0.8876 27 1 3.4533 -3.4912 -0.8923 28 1 2.8989 -6.2024 -1.0329 29 1 3.0889 -7.0729 0.5081 30 1 2.7080 -5.3341 0.5091 31 1 5.2589 -7.7622 -0.5194 32 1 6.5742 -6.5630 -0.5182 33 1 8.1398 -9.6057 0.8443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014115728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:41 Heat of formation + Delta-G solvation = 27.712964 kcal Electronic energy + Delta-G solvation = -17720.023551 eV Core-core repulsion = 14715.163639 eV Total energy + Delta-G solvation = -3004.859912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.03698 -40.66790 -36.68753 -34.77171 -34.33534 -32.94457 -31.58246 -29.28533 -29.19764 -27.28722 -24.93413 -24.22955 -21.62502 -20.56264 -19.61624 -18.70812 -17.99246 -17.70995 -17.01750 -16.96997 -16.59375 -16.10727 -15.19185 -14.73331 -14.61706 -14.41172 -13.97827 -13.82825 -13.55926 -13.47574 -13.32667 -13.20090 -13.09272 -12.79424 -12.55198 -12.20929 -11.83041 -11.67531 -11.42944 -11.28418 -11.06065 -10.86043 -10.63948 -9.50244 -8.94285 -8.22282 -6.36578 -0.23829 0.32024 0.77397 1.38437 1.40617 1.52011 1.63386 1.66827 1.82968 2.26659 2.42889 3.08205 3.39101 3.49139 3.61477 3.98018 4.24716 4.46674 4.73443 4.76178 4.78521 4.85831 4.96749 5.00755 5.04498 5.22802 5.44056 5.53400 5.79053 5.85030 6.04928 6.59129 6.73318 6.83659 7.19474 7.36748 8.85166 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033528 B = 0.003810 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.920874 B = 7346.723450 C = 7535.074683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.223 3.777 3 N -0.333 5.333 4 N -0.460 5.460 5 H 0.455 0.545 6 C 0.248 3.752 7 S 0.077 5.923 8 C -0.121 4.121 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.598 5.598 12 C 0.073 3.927 13 C 0.259 3.741 14 C -0.543 4.543 15 H 0.055 0.945 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.967 3.033 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.282 1.282 22 N -0.557 5.557 23 H 0.098 0.902 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.140 0.860 27 H 0.145 0.855 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.029 0.971 32 H 0.003 0.997 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.561 15.419 -1.603 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 N -0.164 5.164 4 N -0.181 5.181 5 H 0.304 0.696 6 C -0.138 4.138 7 S 0.303 5.697 8 C -0.273 4.273 9 C 0.300 3.700 10 O -0.462 6.462 11 N -0.329 5.329 12 C -0.069 4.069 13 C 0.138 3.862 14 C -0.582 4.582 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.208 1.208 22 N -0.291 5.291 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.158 0.842 27 H 0.163 0.837 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.161 16.003 -1.655 20.785 hybrid contribution 0.117 -0.558 0.683 0.890 sum -13.044 15.444 -0.972 20.239 Atomic orbital electron populations 1.20310 0.80959 1.05324 1.05070 1.25158 1.00004 0.84978 0.95943 1.77833 0.86841 1.22998 1.28742 1.47781 1.08248 1.04384 1.57729 0.69582 1.26807 0.99071 0.88466 0.99453 1.86677 0.96496 0.94932 1.91549 1.23686 1.00894 0.91806 1.10870 1.20129 0.88716 0.84148 0.77049 1.90698 1.19565 1.83541 1.52359 1.48055 1.09240 1.05325 1.70310 1.22045 0.78412 1.03324 1.03088 1.18849 0.87028 0.84151 0.96220 1.21735 1.24867 1.18540 0.93043 0.92644 1.25832 0.95401 0.95972 1.01839 1.70049 1.29098 1.24656 1.32923 0.85379 0.77899 0.78336 0.79264 1.19084 1.19521 1.20836 1.70972 0.98678 1.31611 1.27852 0.88376 0.88604 0.88376 0.84190 0.83677 0.90584 0.91005 0.88792 0.95259 0.97880 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.24 0.75 -0.01 16 2 C 0.22 5.02 8.13 138.64 1.13 6.15 16 3 N -0.33 -7.96 12.78 -51.34 -0.66 -8.62 16 4 N -0.46 -10.06 7.47 -57.58 -0.43 -10.49 16 5 H 0.46 7.18 8.96 -213.12 -1.91 5.27 16 6 C 0.25 6.10 8.31 179.91 1.50 7.60 16 7 S 0.08 2.07 21.45 -56.49 -1.21 0.86 16 8 C -0.12 -3.30 4.25 71.24 0.30 -3.00 16 9 C 0.51 20.18 7.69 87.66 0.67 20.85 16 10 O -0.58 -28.44 15.44 -3.05 -0.05 -28.48 16 11 N -0.60 -24.12 2.86 -851.12 -2.43 -26.55 16 12 C 0.07 2.03 10.24 127.77 1.31 3.34 16 13 C 0.26 13.50 5.16 85.63 0.44 13.94 16 14 C -0.54 -30.56 9.39 25.60 0.24 -30.32 16 15 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.01 0.49 5.46 84.66 0.46 0.95 16 17 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 18 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 N -0.56 -13.95 10.58 -188.25 -1.99 -15.94 16 23 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.14 3.36 7.40 -2.40 -0.02 3.34 16 27 H 0.15 3.28 8.11 -2.40 -0.02 3.26 16 28 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 2.09 8.07 -2.38 -0.02 2.08 16 30 H 0.09 1.98 6.44 -2.39 -0.02 1.96 16 31 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 32 H 0.00 0.18 7.42 -2.39 -0.02 0.17 16 33 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -74.67 307.02 1.58 -73.10 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -0.77 Total: 5.26 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.80 Total: 19.51 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -5.22 Total: -116.48 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.21 Total: 0.86 kcal Total: -74.67 1.58 -73.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014115728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.808 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds