Wall clock time and date at job start Mon Mar 30 2020 01:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 N 1.46507 * 109.47005 * 180.02562 * 13 11 10 15 15 C 1.39812 * 120.00171 * 180.02562 * 14 13 11 16 16 C 1.38894 * 120.03547 * 179.97438 * 15 14 13 17 17 C 1.38139 * 119.99230 * 179.97438 * 16 15 14 18 18 C 1.38424 * 120.06961 * 359.97438 * 17 16 15 19 19 F 1.35096 * 119.95722 * 179.97438 * 18 17 16 20 20 C 1.38659 * 120.08050 * 0.02562 * 18 17 16 21 21 F 1.35102 * 119.99836 * 180.02562 * 20 18 17 22 22 C 1.38329 * 120.00705 * 359.74628 * 20 18 17 23 23 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 25 25 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 26 26 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 28 28 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 29 29 H 0.97004 * 119.99553 * 359.97438 * 14 13 11 30 30 H 1.07992 * 120.00566 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.96869 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.04144 * 180.28112 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8994 0.0034 13 6 5.8274 -4.2421 0.0080 14 7 7.2925 -4.2421 0.0086 15 6 7.9916 -5.4529 0.0133 16 6 9.3806 -5.4537 0.0132 17 6 10.0704 -6.6505 0.0184 18 6 9.3789 -7.8496 0.0242 19 9 10.0558 -9.0187 0.0287 20 6 7.9923 -7.8523 0.0242 21 9 7.3190 -9.0236 0.0304 22 6 7.2982 -6.6557 0.0238 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8753 -0.6802 -0.8887 26 1 3.3696 -3.3125 0.0002 27 1 5.4642 -4.7521 0.9003 28 1 5.4641 -4.7598 -0.8796 29 1 7.7775 -3.4020 0.0049 30 1 9.9211 -4.5188 0.0092 31 1 11.1504 -6.6507 0.0180 32 1 6.2182 -6.6571 0.0284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020050352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:40 Heat of formation + Delta-G solvation = -101.718217 kcal Electronic energy + Delta-G solvation = -19143.040459 eV Core-core repulsion = 15546.434852 eV Total energy + Delta-G solvation = -3596.605607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.51865 -48.57500 -39.87803 -38.92991 -35.36084 -34.46888 -32.51719 -31.02836 -30.13145 -28.29111 -26.28427 -23.48177 -22.46500 -21.85739 -20.21728 -18.63550 -17.94367 -17.31051 -17.03154 -16.39128 -16.17028 -15.91701 -15.58976 -15.19892 -15.01279 -14.80962 -14.52941 -14.20806 -13.83337 -13.79546 -12.99106 -12.98016 -12.61613 -12.59364 -12.42657 -12.01375 -11.47346 -11.15090 -10.87534 -10.18437 -10.08264 -9.64838 -9.56902 -9.24939 -8.89899 -8.39895 -7.70990 -6.31058 -4.34737 0.78984 0.97328 2.87098 2.90832 3.19027 3.25096 3.26466 3.32705 3.67741 3.85613 4.22228 4.23956 4.37913 4.73167 4.87115 4.95518 5.03735 5.15608 5.19875 5.27549 5.56574 5.65405 5.75788 5.87039 6.43527 6.61929 6.87828 6.91134 6.97380 7.22991 7.44799 7.93660 8.31820 8.54170 8.69709 9.27637 10.80706 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046403 B = 0.003034 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.262312 B = 9226.269845 C = 9809.075413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.697 5.697 11 C 0.496 3.504 12 O -0.555 6.555 13 C 0.097 3.903 14 N -0.721 5.721 15 C 0.246 3.754 16 C -0.178 4.178 17 C -0.073 4.073 18 C -0.005 4.005 19 F -0.139 7.139 20 C 0.121 3.879 21 F -0.129 7.129 22 C -0.216 4.216 23 H 0.269 0.731 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.400 0.600 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.417 0.583 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.811 -13.188 0.050 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.099 3.901 10 N -0.345 5.345 11 C 0.280 3.720 12 O -0.435 6.435 13 C -0.031 4.031 14 N -0.352 5.352 15 C 0.139 3.861 16 C -0.201 4.201 17 C -0.093 4.093 18 C -0.027 4.027 19 F -0.117 7.117 20 C 0.100 3.900 21 F -0.108 7.108 22 C -0.240 4.240 23 H 0.079 0.921 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.234 0.766 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.256 0.744 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.924 -12.437 0.056 21.003 hybrid contribution 0.023 0.415 -0.027 0.416 sum 16.947 -12.022 0.029 20.778 Atomic orbital electron populations 1.69872 1.06227 1.27584 1.48957 1.24798 0.94804 0.99206 0.93752 0.86812 0.80514 0.83228 0.79084 1.19796 1.20795 1.18559 1.21057 0.88325 0.95344 1.53855 0.90124 1.19556 0.95472 0.78112 0.97004 1.46139 1.05282 1.11600 1.71476 1.20308 0.83755 0.90225 0.77740 1.90657 1.55420 1.45853 1.51545 1.21211 0.81779 0.96312 1.03766 1.44518 1.04754 1.05931 1.79980 1.17518 0.90890 0.85752 0.91935 1.20527 0.91726 0.98591 1.09245 1.20758 1.00707 0.89756 0.98030 1.17377 0.88151 0.82597 1.14575 1.91480 1.79699 1.45663 1.94903 1.17333 0.88199 0.81852 1.02628 1.91523 1.80129 1.45438 1.93693 1.20465 1.01077 0.89295 1.13207 0.92119 0.95461 0.95927 0.76584 0.88931 0.88944 0.74366 0.84325 0.83822 0.83718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.55 -14.31 9.83 -34.44 -0.34 -14.65 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 9 C 0.22 5.05 4.50 -5.19 -0.02 5.03 16 10 N -0.70 -12.51 5.55 -61.48 -0.34 -12.85 16 11 C 0.50 8.07 7.90 -10.98 -0.09 7.98 16 12 O -0.56 -10.98 15.67 5.56 0.09 -10.89 16 13 C 0.10 1.09 5.39 -5.19 -0.03 1.06 16 14 N -0.72 -7.93 5.71 -59.79 -0.34 -8.27 16 15 C 0.25 2.48 6.65 -83.75 -0.56 1.92 16 16 C -0.18 -1.56 9.89 -39.38 -0.39 -1.95 16 17 C -0.07 -0.63 10.02 -39.55 -0.40 -1.03 16 18 C 0.00 -0.05 7.30 -39.36 -0.29 -0.34 16 19 F -0.14 -1.65 17.18 2.25 0.04 -1.61 16 20 C 0.12 1.35 7.30 -39.39 -0.29 1.06 16 21 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 22 C -0.22 -2.20 9.29 -39.33 -0.37 -2.56 16 23 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 25 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 26 H 0.40 6.15 8.32 -40.82 -0.34 5.81 16 27 H 0.09 0.87 7.94 -51.93 -0.41 0.45 16 28 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 29 H 0.42 4.88 7.45 -40.82 -0.30 4.58 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.15 1.27 6.73 -52.49 -0.35 0.92 16 LS Contribution 292.44 15.07 4.41 4.41 Total: -1.00 -30.63 292.44 -5.88 -36.51 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.01 Total: 4.60 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.86 Total: -1.42 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.09 Total: -46.00 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.63 -5.88 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020050352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.210 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds