Wall clock time and date at job start Mon Mar 30 2020 01:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99508 * 2 1 4 4 H 1.48500 * 109.46756 * 269.99504 * 3 2 1 5 5 H 1.48496 * 109.47426 * 29.99607 * 3 2 1 6 6 H 1.48507 * 109.47018 * 149.99793 * 3 2 1 7 7 C 1.37878 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99714 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99893 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99649 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99774 * 179.72962 * 11 10 9 14 14 N 1.46507 * 109.47005 * 180.02562 * 13 11 10 15 15 C 1.39812 * 120.00171 * 180.02562 * 14 13 11 16 16 C 1.38894 * 120.03547 * 179.97438 * 15 14 13 17 17 C 1.38139 * 119.99230 * 179.97438 * 16 15 14 18 18 C 1.38424 * 120.06961 * 359.97438 * 17 16 15 19 19 F 1.35096 * 119.95722 * 179.97438 * 18 17 16 20 20 C 1.38659 * 120.08050 * 0.02562 * 18 17 16 21 21 F 1.35102 * 119.99836 * 180.02562 * 20 18 17 22 22 C 1.38329 * 120.00705 * 359.74628 * 20 18 17 23 23 H 0.96996 * 120.00207 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46743 * 60.00597 * 9 7 2 25 25 H 1.08994 * 109.47542 * 300.00456 * 9 7 2 26 26 H 0.97005 * 120.00261 * 0.02562 * 10 9 7 27 27 H 1.09001 * 109.46809 * 299.99238 * 13 11 10 28 28 H 1.08993 * 109.47525 * 59.99679 * 13 11 10 29 29 H 0.97004 * 119.99553 * 359.97438 * 14 13 11 30 30 H 1.07992 * 120.00566 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.96869 * 179.97438 * 17 16 15 32 32 H 1.07998 * 120.04144 * 180.28112 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0010 11 6 5.3251 -2.8214 0.0020 12 8 6.1132 -1.8994 0.0034 13 6 5.8274 -4.2421 0.0080 14 7 7.2925 -4.2421 0.0086 15 6 7.9916 -5.4529 0.0133 16 6 9.3806 -5.4537 0.0132 17 6 10.0704 -6.6505 0.0184 18 6 9.3789 -7.8496 0.0242 19 9 10.0558 -9.0187 0.0287 20 6 7.9923 -7.8523 0.0242 21 9 7.3190 -9.0236 0.0304 22 6 7.2982 -6.6557 0.0238 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6799 0.8912 25 1 3.8753 -0.6802 -0.8887 26 1 3.3696 -3.3125 0.0002 27 1 5.4642 -4.7521 0.9003 28 1 5.4641 -4.7598 -0.8796 29 1 7.7775 -3.4020 0.0049 30 1 9.9211 -4.5188 0.0092 31 1 11.1504 -6.6507 0.0180 32 1 6.2182 -6.6571 0.0284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020050352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:39 Heat of formation + Delta-G solvation = -123.248531 kcal Electronic energy + Delta-G solvation = -19143.974083 eV Core-core repulsion = 15546.434852 eV Total energy + Delta-G solvation = -3597.539231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.37469 -49.43680 -40.96576 -39.96974 -36.47114 -35.90203 -34.44737 -31.77124 -31.23389 -29.77737 -27.38559 -24.48269 -23.80100 -22.92899 -21.59520 -19.69437 -18.98370 -18.57482 -18.07068 -17.46802 -17.24236 -17.18198 -16.76182 -16.29922 -16.18966 -15.88889 -15.55396 -15.24426 -15.04389 -14.92111 -14.55806 -14.11468 -13.99482 -13.75547 -13.40689 -13.07457 -13.07084 -12.69982 -12.20181 -11.94112 -11.66499 -11.00993 -10.98462 -10.92432 -10.00460 -9.99485 -8.50475 -8.40140 -6.47617 0.04419 0.21338 1.33257 1.36190 1.47089 1.58305 1.93840 2.27733 2.51073 2.59001 2.95617 3.01409 3.42173 3.68550 3.74577 4.04384 4.13606 4.30999 4.36370 4.53909 4.75436 4.83006 4.94377 5.02030 5.06820 5.15641 5.24952 5.43574 5.66518 6.03025 6.11967 6.53074 6.58697 6.77368 7.12844 7.30134 8.74507 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046403 B = 0.003034 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.262312 B = 9226.269845 C = 9809.075413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.231 3.769 10 N -0.699 5.699 11 C 0.498 3.502 12 O -0.589 6.589 13 C 0.109 3.891 14 N -0.726 5.726 15 C 0.240 3.760 16 C -0.171 4.171 17 C -0.065 4.065 18 C -0.021 4.021 19 F -0.149 7.149 20 C 0.102 3.898 21 F -0.140 7.140 22 C -0.216 4.216 23 H 0.272 0.728 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.413 0.587 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.414 0.586 30 H 0.160 0.840 31 H 0.170 0.830 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.474 -13.198 0.022 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.108 3.892 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.471 6.471 13 C -0.018 4.018 14 N -0.357 5.357 15 C 0.134 3.866 16 C -0.194 4.194 17 C -0.084 4.084 18 C -0.043 4.043 19 F -0.128 7.128 20 C 0.081 3.919 21 F -0.119 7.119 22 C -0.240 4.240 23 H 0.081 0.919 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.249 0.751 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.253 0.747 30 H 0.177 0.823 31 H 0.188 0.812 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.599 -12.497 0.026 22.408 hybrid contribution -0.463 0.348 -0.017 0.580 sum 18.136 -12.149 0.009 21.829 Atomic orbital electron populations 1.69984 1.07789 1.28629 1.50690 1.25621 0.95514 1.02768 0.93642 0.85850 0.79304 0.79281 0.79395 1.19063 1.20170 1.18142 1.21310 0.90061 0.94597 1.52587 0.92101 1.19122 0.93277 0.80879 0.95956 1.45941 1.06591 1.10042 1.72300 1.21087 0.82493 0.92121 0.75853 1.90641 1.56069 1.47687 1.52707 1.21205 0.82042 0.92450 1.06123 1.44487 1.04521 1.06065 1.80609 1.17610 0.91425 0.85241 0.92305 1.20807 0.91368 0.99459 1.07747 1.21025 1.01990 0.88743 0.96669 1.17697 0.88263 0.82994 1.15331 1.91451 1.79864 1.46404 1.95059 1.17550 0.88543 0.81903 1.03871 1.91491 1.80377 1.46097 1.93943 1.20570 1.01770 0.88893 1.12771 0.91881 0.96634 0.96756 0.75096 0.86473 0.86453 0.74719 0.82265 0.81241 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 13.96 21.45 0.30 -53.99 16 2 C 0.02 1.36 5.47 84.65 0.46 1.82 16 3 Si 0.94 42.30 27.47 68.60 1.88 44.18 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -11.34 6.54 99.48 0.65 -10.69 16 7 C -0.55 -28.69 9.83 25.60 0.25 -28.44 16 8 H 0.06 3.35 7.84 -2.91 -0.02 3.32 16 9 C 0.23 10.46 4.50 85.63 0.38 10.85 16 10 N -0.70 -24.19 5.55 -466.79 -2.59 -26.78 16 11 C 0.50 15.25 7.90 87.65 0.69 15.95 16 12 O -0.59 -22.50 15.67 -3.04 -0.05 -22.54 16 13 C 0.11 2.11 5.39 85.63 0.46 2.57 16 14 N -0.73 -13.98 5.71 -343.08 -1.96 -15.94 16 15 C 0.24 4.20 6.65 38.17 0.25 4.46 16 16 C -0.17 -2.50 9.89 22.40 0.22 -2.27 16 17 C -0.06 -0.96 10.02 22.29 0.22 -0.74 16 18 C -0.02 -0.42 7.30 22.41 0.16 -0.26 16 19 F -0.15 -3.41 17.18 44.97 0.77 -2.64 16 20 C 0.10 2.16 7.30 22.39 0.16 2.32 16 21 F -0.14 -3.34 17.18 44.97 0.77 -2.57 16 22 C -0.22 -3.91 9.29 22.44 0.21 -3.71 16 23 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 25 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 26 H 0.41 12.10 8.32 -92.70 -0.77 11.33 16 27 H 0.12 1.76 7.94 -2.39 -0.02 1.75 16 28 H 0.12 1.76 7.96 -2.39 -0.02 1.74 16 29 H 0.41 8.73 7.45 -92.71 -0.69 8.04 16 30 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.16 2.34 6.73 -2.91 -0.02 2.32 16 Total: -1.00 -65.93 292.44 2.29 -63.64 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.33 Total: 14.09 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 3.49 Total: 2.55 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -4.25 Total: -96.71 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 1.54 Total: -5.21 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.18 kcal Total: -65.93 2.29 -63.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020050352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.610 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds