Wall clock time and date at job start Mon Mar 30 2020 01:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99716 * 2 1 4 4 H 1.48497 * 109.46643 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46930 * 299.99709 * 3 2 1 6 6 H 1.48501 * 109.47088 * 60.00201 * 3 2 1 7 7 C 1.37874 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00127 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00587 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47475 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99802 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00226 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99852 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.47086 * 179.97438 * 13 11 10 15 15 C 1.40021 * 110.99800 * 179.97438 * 14 13 11 16 16 C 1.38995 * 120.08180 * 120.00482 * 15 14 13 17 17 F 1.35095 * 120.04544 * 359.69535 * 16 15 14 18 18 C 1.38331 * 119.91169 * 179.97438 * 16 15 14 19 19 C 1.38275 * 120.08603 * 0.02562 * 18 16 15 20 20 C 1.38281 * 120.17186 * 359.95859 * 19 18 16 21 21 C 1.38326 * 120.08592 * 0.04241 * 20 19 18 22 22 F 1.35092 * 120.04657 * 180.02562 * 21 20 19 23 23 H 0.96995 * 120.00094 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46921 * 59.99602 * 9 7 2 25 25 H 1.08998 * 109.47085 * 300.00450 * 9 7 2 26 26 H 0.97001 * 119.99983 * 359.97438 * 10 9 7 27 27 H 1.09006 * 109.46840 * 59.99546 * 13 11 10 28 28 H 1.08990 * 109.46995 * 299.99781 * 13 11 10 29 29 H 1.00898 * 110.99715 * 56.04770 * 14 13 11 30 30 H 1.08000 * 119.95886 * 179.97438 * 18 16 15 31 31 H 1.07994 * 119.91618 * 180.02562 * 19 18 16 32 32 H 1.07999 * 119.95280 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0027 11 6 1.7539 -4.8834 0.0033 12 8 0.5615 -5.1050 0.0035 13 6 2.7332 -6.0288 0.0038 14 7 1.9987 -7.3010 0.0050 15 6 2.8799 -8.3891 0.0049 16 6 2.8519 -9.3085 1.0469 17 9 1.9781 -9.1504 2.0651 18 6 3.7237 -10.3825 1.0429 19 6 4.6226 -10.5418 0.0044 20 6 4.6534 -9.6294 -1.0342 21 6 3.7848 -8.5528 -1.0374 22 9 3.8152 -7.6622 -2.0528 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6248 -2.5564 0.8919 26 1 3.1568 -3.4354 0.0022 27 1 3.3600 -5.9706 0.8937 28 1 3.3597 -5.9715 -0.8863 29 1 1.3620 -7.3516 -0.7761 30 1 3.7028 -11.0971 1.8525 31 1 5.3017 -11.3815 0.0039 32 1 5.3566 -9.7574 -1.8438 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020361234.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:28 Heat of formation + Delta-G solvation = -121.568500 kcal Electronic energy + Delta-G solvation = -19659.257584 eV Core-core repulsion = 16061.791204 eV Total energy + Delta-G solvation = -3597.466380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.20222 -49.88233 -40.79745 -39.86169 -36.80307 -36.07880 -34.39139 -31.32292 -31.21542 -29.49632 -27.21198 -24.52684 -23.84121 -23.15293 -21.55155 -19.41717 -19.11210 -18.49418 -18.08969 -17.49017 -16.98195 -16.92066 -16.73044 -16.60369 -16.29917 -16.17629 -15.67245 -15.27022 -15.22153 -14.55016 -14.24700 -13.97623 -13.82769 -13.42848 -12.98109 -12.94054 -12.88371 -12.75245 -12.65341 -12.23840 -11.48251 -10.92568 -10.83834 -10.06580 -9.89995 -9.81802 -9.75890 -8.30945 -6.47968 -0.13170 -0.02878 1.42369 1.43867 1.57392 1.65001 2.15069 2.35561 2.42566 2.79270 2.91719 3.03955 3.43594 3.73656 3.80810 3.89333 4.16291 4.19230 4.21761 4.51040 4.81156 5.00447 5.05377 5.06922 5.20334 5.20436 5.43944 5.48465 5.65458 5.73096 5.81987 6.10014 6.62425 6.83078 7.20615 7.40860 8.81627 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035366 B = 0.003516 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.531777 B = 7961.194039 C = 8332.146148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.705 5.705 11 C 0.497 3.503 12 O -0.588 6.588 13 C 0.055 3.945 14 N -0.638 5.638 15 C 0.000 4.000 16 C 0.127 3.873 17 F -0.138 7.138 18 C -0.149 4.149 19 C -0.046 4.046 20 C -0.148 4.148 21 C 0.076 3.924 22 F -0.140 7.140 23 H 0.269 0.731 24 H -0.011 1.011 25 H -0.013 1.013 26 H 0.409 0.591 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.360 0.640 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.738 -22.762 -0.938 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.356 5.356 11 C 0.284 3.716 12 O -0.469 6.469 13 C -0.075 4.075 14 N -0.271 5.271 15 C -0.098 4.098 16 C 0.106 3.894 17 F -0.116 7.116 18 C -0.168 4.168 19 C -0.064 4.064 20 C -0.167 4.167 21 C 0.054 3.946 22 F -0.119 7.119 23 H 0.078 0.922 24 H 0.007 0.993 25 H 0.005 0.995 26 H 0.245 0.755 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.184 0.816 30 H 0.189 0.811 31 H 0.206 0.794 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.583 -22.717 -0.268 26.996 hybrid contribution -0.070 1.564 -0.881 1.797 sum 14.512 -21.153 -1.150 25.679 Atomic orbital electron populations 1.70148 1.08321 1.28570 1.49940 1.26101 0.95808 1.04012 0.93794 0.85073 0.79065 0.77127 0.77708 1.17571 1.20377 1.20424 1.21643 0.94351 0.90465 1.52935 0.89710 1.18575 0.88672 0.84234 0.94176 1.46142 1.11341 1.05303 1.72774 1.21083 0.89636 0.84856 0.76064 1.90648 1.19027 1.85325 1.51873 1.21893 0.94365 0.86110 1.05165 1.57445 1.18154 0.99476 1.52021 1.18912 0.98507 0.96031 0.96307 1.17757 0.90932 0.95904 0.84762 1.91508 1.67608 1.95428 1.57073 1.21600 0.95651 0.97074 1.02515 1.21403 0.96404 0.98524 0.90074 1.21571 0.99601 0.93207 1.02315 1.18533 0.99364 0.90820 0.85896 1.91475 1.95753 1.66940 1.57731 0.92204 0.99312 0.99464 0.75509 0.86233 0.89171 0.81589 0.81073 0.79371 0.81389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.78 29.54 68.60 2.03 44.80 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 8 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.27 15.03 5.43 85.63 0.46 15.49 16 10 N -0.71 -30.98 5.55 -466.79 -2.59 -33.57 16 11 C 0.50 21.14 7.87 87.66 0.69 21.83 16 12 O -0.59 -30.74 16.20 -3.01 -0.05 -30.79 16 13 C 0.06 1.69 5.84 85.56 0.50 2.19 16 14 N -0.64 -19.94 5.87 -341.80 -2.01 -21.95 16 15 C 0.00 0.00 5.61 38.20 0.21 0.21 16 16 C 0.13 2.77 7.31 22.47 0.16 2.93 16 17 F -0.14 -3.80 17.08 44.97 0.77 -3.03 16 18 C -0.15 -1.83 10.02 22.30 0.22 -1.60 16 19 C -0.05 -0.35 10.04 22.29 0.22 -0.13 16 20 C -0.15 -1.72 10.02 22.30 0.22 -1.50 16 21 C 0.08 1.50 6.99 22.47 0.16 1.66 16 22 F -0.14 -3.24 15.10 44.97 0.68 -2.56 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 25 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 26 H 0.41 14.76 8.32 -92.71 -0.77 13.99 16 27 H 0.12 3.21 8.14 -2.38 -0.02 3.19 16 28 H 0.09 2.42 6.06 -2.39 -0.01 2.40 16 29 H 0.36 11.77 8.46 -89.70 -0.76 11.01 16 30 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 31 H 0.19 -0.17 8.06 -2.91 -0.02 -0.19 16 32 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -76.83 295.14 2.33 -74.50 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.35 Total: 18.19 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 3.56 Total: 11.14 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -4.31 Total: -112.25 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.79 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.45 Total: -5.60 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -76.83 2.33 -74.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020361234.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.066 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds