Wall clock time and date at job start Mon Mar 30 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47371 * 2 1 4 4 N 1.30586 * 125.43210 * 269.96326 * 3 2 1 5 5 N 1.40419 * 107.01308 * 180.02562 * 4 3 2 6 6 H 0.96999 * 126.83745 * 179.97438 * 5 4 3 7 7 C 1.35070 * 106.33110 * 0.02562 * 5 4 3 8 8 S 1.76204 * 126.09002 * 179.97438 * 7 5 4 9 9 C 1.80998 * 99.99934 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47021 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00037 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00162 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46994 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00377 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00035 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99988 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00244 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46970 * 90.00384 * 18 16 14 20 20 H 1.48501 * 109.47309 * 210.00337 * 18 16 14 21 21 H 1.48506 * 109.47142 * 330.00407 * 18 16 14 22 22 N 1.31654 * 107.82630 * 359.97438 * 7 5 4 23 23 H 1.08993 * 109.47147 * 300.00111 * 1 2 3 24 24 H 1.09003 * 109.47143 * 59.99840 * 1 2 3 25 25 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47131 * 240.00555 * 2 1 3 27 27 H 1.08998 * 109.47420 * 119.99791 * 2 1 3 28 28 H 1.09003 * 109.47039 * 299.99800 * 9 8 7 29 29 H 1.08996 * 109.47484 * 59.99499 * 9 8 7 30 30 H 0.97002 * 120.00079 * 0.02562 * 12 10 9 31 31 H 1.09002 * 109.46787 * 300.00400 * 13 12 10 32 32 H 1.09003 * 109.46663 * 59.99959 * 13 12 10 33 33 H 0.97007 * 120.00374 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2854 2.1344 -1.0640 5 7 2.7298 3.3903 -0.6203 6 1 2.9963 4.1415 -1.1731 7 6 2.7135 3.3439 0.7295 8 16 3.1762 4.6495 1.8186 9 6 2.8900 3.8441 3.4140 10 6 3.2285 4.8012 4.5278 11 8 3.6247 5.9178 4.2684 12 7 3.0910 4.4165 5.8121 13 6 3.4205 5.3468 6.8948 14 6 3.1822 4.6763 8.2232 15 1 2.8217 3.6588 8.2576 16 6 3.4253 5.3614 9.3947 17 7 3.8647 6.6003 9.3529 18 14 3.1306 4.5301 11.0413 19 1 4.3720 3.8419 11.4776 20 1 2.7500 5.5511 12.0503 21 1 2.0354 3.5364 10.9052 22 7 2.2902 2.1495 1.0866 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8424 3.5530 3.4914 29 1 3.5199 2.9580 3.4920 30 1 2.7745 3.5234 6.0197 31 1 4.4682 5.6375 6.8177 32 1 2.7908 6.2331 6.8165 33 1 4.0355 7.0825 10.1771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025317223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:02 Heat of formation + Delta-G solvation = 33.027305 kcal Electronic energy + Delta-G solvation = -17219.081312 eV Core-core repulsion = 14214.451847 eV Total energy + Delta-G solvation = -3004.629465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.14324 -38.92625 -34.62622 -34.34959 -32.50509 -32.24662 -30.63619 -30.04589 -26.89448 -24.61635 -23.40070 -22.61443 -20.46110 -19.99023 -18.95275 -17.20254 -16.62493 -15.97000 -15.90648 -15.28872 -15.20589 -14.67877 -14.50615 -14.19915 -13.80212 -13.06318 -12.92433 -12.80338 -12.25912 -12.03285 -11.94207 -11.73206 -11.42962 -11.04259 -10.92779 -10.81228 -10.46269 -10.37404 -10.30135 -10.22963 -9.47790 -9.39080 -8.81690 -8.08146 -7.88584 -6.21903 -4.29432 0.80460 1.26065 1.83069 2.57920 2.65135 3.08073 3.21939 3.28308 3.30526 3.87270 4.10317 4.30926 4.41353 5.00200 5.00666 5.09845 5.14902 5.17667 5.21386 5.43183 5.57003 5.71694 5.88056 5.95238 6.20250 6.64078 7.17714 7.23720 7.41943 7.56746 7.75819 7.89056 8.42969 8.64576 8.89290 9.37096 10.88186 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.003323 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.734782 B = 8423.122759 C = 9280.331481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C 0.237 3.763 4 N -0.315 5.315 5 N -0.467 5.467 6 H 0.444 0.556 7 C 0.249 3.751 8 S 0.086 5.914 9 C -0.140 4.140 10 C 0.515 3.485 11 O -0.544 6.544 12 N -0.700 5.700 13 C 0.250 3.750 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.540 5.540 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.395 0.605 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 -10.702 -17.630 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.048 4.048 4 N -0.145 5.145 5 N -0.187 5.187 6 H 0.290 0.710 7 C -0.136 4.136 8 S 0.312 5.688 9 C -0.292 4.292 10 C 0.297 3.703 11 O -0.423 6.423 12 N -0.348 5.348 13 C 0.129 3.871 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.274 5.274 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.228 0.772 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.733 -9.063 -18.267 20.730 hybrid contribution -0.469 -1.394 1.023 1.792 sum -4.202 -10.457 -17.244 20.600 Atomic orbital electron populations 1.21708 0.93617 1.02428 1.02617 1.19911 0.96525 0.86282 1.04208 1.24331 0.96828 0.98071 0.85585 1.77846 1.23249 0.91067 1.22335 1.47783 1.52785 1.13534 1.04632 0.70969 1.27002 0.99176 0.99316 0.88135 1.86505 1.80602 1.06776 0.94874 1.23841 1.08545 1.03273 0.93589 1.19506 0.79531 0.87377 0.83919 1.90718 1.47362 1.20923 1.83323 1.46387 1.64716 1.18444 1.05263 1.19207 0.96878 0.88580 0.82422 1.21204 1.46851 1.00105 0.90253 0.91737 1.24948 0.94612 0.94826 0.99567 1.69969 1.43808 1.09976 1.28443 0.86392 0.78633 0.79082 0.82688 1.20415 1.20980 1.19677 1.70972 1.23949 1.01649 1.30797 0.91996 0.92498 0.91401 0.89526 0.88898 0.85870 0.85854 0.77198 0.95192 0.95177 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.75 16 2 C -0.03 -0.25 6.56 -27.88 -0.18 -0.44 16 3 C 0.24 2.92 7.38 -156.87 -1.16 1.76 16 4 N -0.31 -3.99 12.78 32.42 0.41 -3.58 16 5 N -0.47 -5.31 7.47 30.45 0.23 -5.08 16 6 H 0.44 3.60 8.96 -182.36 -1.63 1.97 16 7 C 0.25 3.18 8.31 -89.38 -0.74 2.43 16 8 S 0.09 1.14 21.45 -107.50 -2.31 -1.17 16 9 C -0.14 -1.92 5.70 36.01 0.21 -1.72 16 10 C 0.51 9.58 7.85 -10.98 -0.09 9.49 16 11 O -0.54 -12.21 15.86 5.55 0.09 -12.12 16 12 N -0.70 -13.87 5.55 -61.47 -0.34 -14.21 16 13 C 0.25 6.35 5.43 -5.19 -0.03 6.32 16 14 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.88 -25.51 13.29 55.43 0.74 -24.77 16 18 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 N -0.54 -7.28 10.58 -10.85 -0.11 -7.39 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.12 1.51 8.14 -51.91 -0.42 1.09 16 29 H 0.12 1.51 8.14 -51.92 -0.42 1.09 16 30 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -32.57 310.15 -9.00 -41.56 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.31 Total: 2.61 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.04 Total: 4.09 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.92 Total: -55.03 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.31 Total: -1.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.57 -9.00 -41.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025317223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.589 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds