Wall clock time and date at job start Mon Mar 30 2020 00:55:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.50707 * 109.47371 * 2 1
4 4 N 1.30586 * 125.43210 * 269.96326 * 3 2 1
5 5 N 1.40419 * 107.01308 * 180.02562 * 4 3 2
6 6 H 0.96999 * 126.83745 * 179.97438 * 5 4 3
7 7 C 1.35070 * 106.33110 * 0.02562 * 5 4 3
8 8 S 1.76204 * 126.09002 * 179.97438 * 7 5 4
9 9 C 1.80998 * 99.99934 * 179.97438 * 8 7 5
10 10 C 1.50703 * 109.47021 * 180.02562 * 9 8 7
11 11 O 1.21287 * 120.00037 * 359.97438 * 10 9 8
12 12 N 1.34777 * 120.00162 * 179.97438 * 10 9 8
13 13 C 1.46503 * 120.00055 * 179.97438 * 12 10 9
14 14 C 1.50695 * 109.46994 * 180.02562 * 13 12 10
15 15 H 1.08005 * 120.00377 * 0.02562 * 14 13 12
16 16 C 1.37874 * 120.00035 * 179.97438 * 14 13 12
17 17 N 1.31513 * 119.99988 * 0.02562 * 16 14 13
18 18 Si 1.86800 * 120.00244 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.46970 * 90.00384 * 18 16 14
20 20 H 1.48501 * 109.47309 * 210.00337 * 18 16 14
21 21 H 1.48506 * 109.47142 * 330.00407 * 18 16 14
22 22 N 1.31654 * 107.82630 * 359.97438 * 7 5 4
23 23 H 1.08993 * 109.47147 * 300.00111 * 1 2 3
24 24 H 1.09003 * 109.47143 * 59.99840 * 1 2 3
25 25 H 1.08995 * 109.47065 * 179.97438 * 1 2 3
26 26 H 1.09000 * 109.47131 * 240.00555 * 2 1 3
27 27 H 1.08998 * 109.47420 * 119.99791 * 2 1 3
28 28 H 1.09003 * 109.47039 * 299.99800 * 9 8 7
29 29 H 1.08996 * 109.47484 * 59.99499 * 9 8 7
30 30 H 0.97002 * 120.00079 * 0.02562 * 12 10 9
31 31 H 1.09002 * 109.46787 * 300.00400 * 13 12 10
32 32 H 1.09003 * 109.46663 * 59.99959 * 13 12 10
33 33 H 0.97007 * 120.00374 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0324 1.4209 0.0000
4 7 2.2854 2.1344 -1.0640
5 7 2.7298 3.3903 -0.6203
6 1 2.9963 4.1415 -1.1731
7 6 2.7135 3.3439 0.7295
8 16 3.1762 4.6495 1.8186
9 6 2.8900 3.8441 3.4140
10 6 3.2285 4.8012 4.5278
11 8 3.6247 5.9178 4.2684
12 7 3.0910 4.4165 5.8121
13 6 3.4205 5.3468 6.8948
14 6 3.1822 4.6763 8.2232
15 1 2.8217 3.6588 8.2576
16 6 3.4253 5.3614 9.3947
17 7 3.8647 6.6003 9.3529
18 14 3.1306 4.5301 11.0413
19 1 4.3720 3.8419 11.4776
20 1 2.7500 5.5511 12.0503
21 1 2.0354 3.5364 10.9052
22 7 2.2902 2.1495 1.0866
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3633 -1.0276 -0.0005
26 1 1.8933 -0.5137 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 1.8424 3.5530 3.4914
29 1 3.5199 2.9580 3.4920
30 1 2.7745 3.5234 6.0197
31 1 4.4682 5.6375 6.8177
32 1 2.7908 6.2331 6.8165
33 1 4.0355 7.0825 10.1771
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000025317223.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:55:01
Heat of formation + Delta-G solvation = 9.819832 kcal
Electronic energy + Delta-G solvation = -17220.087663 eV
Core-core repulsion = 14214.451847 eV
Total energy + Delta-G solvation = -3005.635816 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.089 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-43.07660 -40.56015 -36.21618 -35.36998 -34.41450 -33.22561 -31.57383 -31.37152
-28.77390 -25.35868 -24.75879 -24.17363 -21.72663 -21.20149 -20.01330 -18.85757
-17.75928 -17.57863 -17.03735 -16.98126 -16.57380 -16.05557 -15.47677 -15.26308
-14.78243 -14.59416 -14.51994 -14.00755 -13.59990 -13.43355 -13.26917 -12.89431
-12.70320 -12.55209 -12.22532 -12.08992 -11.82252 -11.47947 -11.44056 -11.28298
-11.11784 -11.02812 -10.80273 -9.91776 -8.94463 -8.28234 -6.44340 -0.25107
0.31008 0.75299 1.45817 1.47280 1.55781 1.58620 1.64911 1.80762
2.29595 2.49753 3.07372 3.31155 3.52630 3.76443 4.01288 4.31699
4.34940 4.38470 4.54918 4.98658 5.04562 5.09106 5.10139 5.24741
5.24816 5.41686 5.43854 5.63330 5.84264 5.84605 6.64810 6.74826
6.82734 7.21254 7.35841 8.83714
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.029290 B = 0.003323 C = 0.003016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 955.734782 B = 8423.122759 C = 9280.331481
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.030 4.030
3 C 0.228 3.772
4 N -0.329 5.329
5 N -0.459 5.459
6 H 0.456 0.544
7 C 0.246 3.754
8 S 0.085 5.915
9 C -0.127 4.127
10 C 0.516 3.484
11 O -0.585 6.585
12 N -0.695 5.695
13 C 0.266 3.734
14 C -0.556 4.556
15 H 0.085 0.915
16 C 0.005 3.995
17 N -0.930 5.930
18 Si 0.983 3.017
19 H -0.272 1.272
20 H -0.286 1.286
21 H -0.255 1.255
22 N -0.555 5.555
23 H 0.049 0.951
24 H 0.049 0.951
25 H 0.090 0.910
26 H 0.101 0.899
27 H 0.102 0.898
28 H 0.144 0.856
29 H 0.145 0.855
30 H 0.413 0.587
31 H -0.006 1.006
32 H -0.006 1.006
33 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.159 -13.190 -17.795 22.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.070 4.070
3 C -0.056 4.056
4 N -0.159 5.159
5 N -0.181 5.181
6 H 0.305 0.695
7 C -0.140 4.140
8 S 0.311 5.689
9 C -0.278 4.278
10 C 0.301 3.699
11 O -0.467 6.467
12 N -0.345 5.345
13 C 0.143 3.857
14 C -0.594 4.594
15 H 0.103 0.897
16 C -0.195 4.195
17 N -0.569 5.569
18 Si 0.806 3.194
19 H -0.197 1.197
20 H -0.211 1.211
21 H -0.179 1.179
22 N -0.289 5.289
23 H 0.068 0.932
24 H 0.068 0.932
25 H 0.109 0.891
26 H 0.119 0.881
27 H 0.120 0.880
28 H 0.162 0.838
29 H 0.163 0.837
30 H 0.249 0.751
31 H 0.011 0.989
32 H 0.012 0.988
33 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -4.590 -11.588 -18.474 22.285
hybrid contribution -0.197 -0.593 0.958 1.144
sum -4.786 -12.181 -17.516 21.865
Atomic orbital electron populations
1.21674 0.92876 1.03643 1.01619 1.20112 0.97040 0.84451 1.05377
1.25015 0.96301 0.99266 0.85051 1.77825 1.23758 0.91473 1.22891
1.47786 1.52157 1.13742 1.04406 0.69534 1.26839 0.99505 0.99141
0.88496 1.86602 1.80918 1.06864 0.94547 1.23648 1.10183 1.02092
0.91879 1.20203 0.77894 0.87484 0.84349 1.90704 1.48828 1.23148
1.84014 1.46068 1.65131 1.18461 1.04848 1.18635 0.93911 0.88645
0.84504 1.21620 1.46369 1.00984 0.90450 0.89660 1.26019 0.94090
0.95335 1.04009 1.70125 1.45185 1.11903 1.29642 0.85185 0.79055
0.78038 0.77129 1.19694 1.21125 1.17890 1.70961 1.24399 1.01951
1.31583 0.93207 0.93207 0.89097 0.88072 0.87984 0.83758 0.83705
0.75096 0.98850 0.98832 0.92250
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16
2 C -0.03 -0.45 6.56 29.85 0.20 -0.26 16
3 C 0.23 5.21 7.38 138.64 1.02 6.23 16
4 N -0.33 -7.83 12.78 -51.33 -0.66 -8.48 16
5 N -0.46 -9.78 7.47 -57.58 -0.43 -10.21 16
6 H 0.46 6.84 8.96 -213.12 -1.91 4.93 16
7 C 0.25 5.88 8.31 179.91 1.50 7.38 16
8 S 0.08 2.13 21.45 -56.49 -1.21 0.92 16
9 C -0.13 -3.25 5.70 71.24 0.41 -2.84 16
10 C 0.52 19.08 7.85 87.66 0.69 19.77 16
11 O -0.59 -26.84 15.86 -3.05 -0.05 -26.88 16
12 N -0.70 -27.43 5.55 -466.77 -2.59 -30.02 16
13 C 0.27 13.94 5.43 85.63 0.46 14.40 16
14 C -0.56 -29.19 9.28 25.60 0.24 -28.96 16
15 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16
16 C 0.01 0.29 5.46 84.65 0.46 0.75 16
17 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16
18 Si 0.98 41.32 29.54 68.60 2.03 43.34 16
19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16
20 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16
21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16
22 N -0.55 -13.87 10.58 -188.24 -1.99 -15.87 16
23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16
25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16
28 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16
29 H 0.14 3.17 8.14 -2.40 -0.02 3.15 16
30 H 0.41 13.21 8.32 -92.71 -0.77 12.44 16
31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16
32 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16
33 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16
Total: -1.00 -71.16 310.15 -0.46 -71.62
By element:
Atomic # 1 Polarization: 16.33 SS G_CDS: -1.53 Total: 14.80 kcal
Atomic # 6 Polarization: 9.65 SS G_CDS: 5.68 Total: 15.33 kcal
Atomic # 7 Polarization: -113.76 SS G_CDS: -5.38 Total: -119.14 kcal
Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.88 kcal
Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal
Atomic # 16 Polarization: 2.13 SS G_CDS: -1.21 Total: 0.92 kcal
Total: -71.16 -0.46 -71.62 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000025317223.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.444 kcal
(2) G-P(sol) polarization free energy of solvation -71.165 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.820 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds