Wall clock time and date at job start Mon Mar 30 2020 00:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50707 * 109.47371 * 2 1 4 4 N 1.30586 * 125.43210 * 269.96326 * 3 2 1 5 5 N 1.40419 * 107.01308 * 180.02562 * 4 3 2 6 6 H 0.96999 * 126.83745 * 179.97438 * 5 4 3 7 7 C 1.35070 * 106.33110 * 0.02562 * 5 4 3 8 8 S 1.76204 * 126.09002 * 179.97438 * 7 5 4 9 9 C 1.80998 * 99.99934 * 179.97438 * 8 7 5 10 10 C 1.50703 * 109.47021 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00037 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00162 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00055 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.46994 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00377 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00035 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99988 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00244 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46970 * 90.00384 * 18 16 14 20 20 H 1.48501 * 109.47309 * 210.00337 * 18 16 14 21 21 H 1.48506 * 109.47142 * 330.00407 * 18 16 14 22 22 N 1.31654 * 107.82630 * 359.97438 * 7 5 4 23 23 H 1.08993 * 109.47147 * 300.00111 * 1 2 3 24 24 H 1.09003 * 109.47143 * 59.99840 * 1 2 3 25 25 H 1.08995 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47131 * 240.00555 * 2 1 3 27 27 H 1.08998 * 109.47420 * 119.99791 * 2 1 3 28 28 H 1.09003 * 109.47039 * 299.99800 * 9 8 7 29 29 H 1.08996 * 109.47484 * 59.99499 * 9 8 7 30 30 H 0.97002 * 120.00079 * 0.02562 * 12 10 9 31 31 H 1.09002 * 109.46787 * 300.00400 * 13 12 10 32 32 H 1.09003 * 109.46663 * 59.99959 * 13 12 10 33 33 H 0.97007 * 120.00374 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2854 2.1344 -1.0640 5 7 2.7298 3.3903 -0.6203 6 1 2.9963 4.1415 -1.1731 7 6 2.7135 3.3439 0.7295 8 16 3.1762 4.6495 1.8186 9 6 2.8900 3.8441 3.4140 10 6 3.2285 4.8012 4.5278 11 8 3.6247 5.9178 4.2684 12 7 3.0910 4.4165 5.8121 13 6 3.4205 5.3468 6.8948 14 6 3.1822 4.6763 8.2232 15 1 2.8217 3.6588 8.2576 16 6 3.4253 5.3614 9.3947 17 7 3.8647 6.6003 9.3529 18 14 3.1306 4.5301 11.0413 19 1 4.3720 3.8419 11.4776 20 1 2.7500 5.5511 12.0503 21 1 2.0354 3.5364 10.9052 22 7 2.2902 2.1495 1.0866 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8424 3.5530 3.4914 29 1 3.5199 2.9580 3.4920 30 1 2.7745 3.5234 6.0197 31 1 4.4682 5.6375 6.8177 32 1 2.7908 6.2331 6.8165 33 1 4.0355 7.0825 10.1771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025317223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:01 Heat of formation + Delta-G solvation = 9.819832 kcal Electronic energy + Delta-G solvation = -17220.087663 eV Core-core repulsion = 14214.451847 eV Total energy + Delta-G solvation = -3005.635816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.07660 -40.56015 -36.21618 -35.36998 -34.41450 -33.22561 -31.57383 -31.37152 -28.77390 -25.35868 -24.75879 -24.17363 -21.72663 -21.20149 -20.01330 -18.85757 -17.75928 -17.57863 -17.03735 -16.98126 -16.57380 -16.05557 -15.47677 -15.26308 -14.78243 -14.59416 -14.51994 -14.00755 -13.59990 -13.43355 -13.26917 -12.89431 -12.70320 -12.55209 -12.22532 -12.08992 -11.82252 -11.47947 -11.44056 -11.28298 -11.11784 -11.02812 -10.80273 -9.91776 -8.94463 -8.28234 -6.44340 -0.25107 0.31008 0.75299 1.45817 1.47280 1.55781 1.58620 1.64911 1.80762 2.29595 2.49753 3.07372 3.31155 3.52630 3.76443 4.01288 4.31699 4.34940 4.38470 4.54918 4.98658 5.04562 5.09106 5.10139 5.24741 5.24816 5.41686 5.43854 5.63330 5.84264 5.84605 6.64810 6.74826 6.82734 7.21254 7.35841 8.83714 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.003323 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.734782 B = 8423.122759 C = 9280.331481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.030 4.030 3 C 0.228 3.772 4 N -0.329 5.329 5 N -0.459 5.459 6 H 0.456 0.544 7 C 0.246 3.754 8 S 0.085 5.915 9 C -0.127 4.127 10 C 0.516 3.484 11 O -0.585 6.585 12 N -0.695 5.695 13 C 0.266 3.734 14 C -0.556 4.556 15 H 0.085 0.915 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.983 3.017 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.255 1.255 22 N -0.555 5.555 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.413 0.587 31 H -0.006 1.006 32 H -0.006 1.006 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.159 -13.190 -17.795 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.056 4.056 4 N -0.159 5.159 5 N -0.181 5.181 6 H 0.305 0.695 7 C -0.140 4.140 8 S 0.311 5.689 9 C -0.278 4.278 10 C 0.301 3.699 11 O -0.467 6.467 12 N -0.345 5.345 13 C 0.143 3.857 14 C -0.594 4.594 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.806 3.194 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.179 1.179 22 N -0.289 5.289 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.109 0.891 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.162 0.838 29 H 0.163 0.837 30 H 0.249 0.751 31 H 0.011 0.989 32 H 0.012 0.988 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.590 -11.588 -18.474 22.285 hybrid contribution -0.197 -0.593 0.958 1.144 sum -4.786 -12.181 -17.516 21.865 Atomic orbital electron populations 1.21674 0.92876 1.03643 1.01619 1.20112 0.97040 0.84451 1.05377 1.25015 0.96301 0.99266 0.85051 1.77825 1.23758 0.91473 1.22891 1.47786 1.52157 1.13742 1.04406 0.69534 1.26839 0.99505 0.99141 0.88496 1.86602 1.80918 1.06864 0.94547 1.23648 1.10183 1.02092 0.91879 1.20203 0.77894 0.87484 0.84349 1.90704 1.48828 1.23148 1.84014 1.46068 1.65131 1.18461 1.04848 1.18635 0.93911 0.88645 0.84504 1.21620 1.46369 1.00984 0.90450 0.89660 1.26019 0.94090 0.95335 1.04009 1.70125 1.45185 1.11903 1.29642 0.85185 0.79055 0.78038 0.77129 1.19694 1.21125 1.17890 1.70961 1.24399 1.01951 1.31583 0.93207 0.93207 0.89097 0.88072 0.87984 0.83758 0.83705 0.75096 0.98850 0.98832 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.13 16 2 C -0.03 -0.45 6.56 29.85 0.20 -0.26 16 3 C 0.23 5.21 7.38 138.64 1.02 6.23 16 4 N -0.33 -7.83 12.78 -51.33 -0.66 -8.48 16 5 N -0.46 -9.78 7.47 -57.58 -0.43 -10.21 16 6 H 0.46 6.84 8.96 -213.12 -1.91 4.93 16 7 C 0.25 5.88 8.31 179.91 1.50 7.38 16 8 S 0.08 2.13 21.45 -56.49 -1.21 0.92 16 9 C -0.13 -3.25 5.70 71.24 0.41 -2.84 16 10 C 0.52 19.08 7.85 87.66 0.69 19.77 16 11 O -0.59 -26.84 15.86 -3.05 -0.05 -26.88 16 12 N -0.70 -27.43 5.55 -466.77 -2.59 -30.02 16 13 C 0.27 13.94 5.43 85.63 0.46 14.40 16 14 C -0.56 -29.19 9.28 25.60 0.24 -28.96 16 15 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 16 C 0.01 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 18 Si 0.98 41.32 29.54 68.60 2.03 43.34 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 20 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 22 N -0.55 -13.87 10.58 -188.24 -1.99 -15.87 16 23 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.14 3.17 8.14 -2.40 -0.02 3.15 16 30 H 0.41 13.21 8.32 -92.71 -0.77 12.44 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 33 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -71.16 310.15 -0.46 -71.62 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -1.53 Total: 14.80 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.68 Total: 15.33 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -5.38 Total: -119.14 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.21 Total: 0.92 kcal Total: -71.16 -0.46 -71.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025317223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.444 kcal (2) G-P(sol) polarization free energy of solvation -71.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds