Wall clock time and date at job start Mon Mar 30 2020 01:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00262 * 2 1 4 4 H 1.48493 * 109.47608 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.46937 * 30.00387 * 3 2 1 6 6 H 1.48507 * 109.47134 * 149.99741 * 3 2 1 7 7 C 1.37882 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99616 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00322 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47101 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.47013 * 179.97438 * 10 9 7 12 12 C 1.32566 * 119.99894 * 125.00475 * 11 10 9 13 13 C 1.47814 * 119.99877 * 180.27676 * 12 11 10 14 14 C 1.39534 * 120.13955 * 359.44350 * 13 12 11 15 15 C 1.37977 * 119.85277 * 179.69910 * 14 13 12 16 16 C 1.38343 * 120.14102 * 0.60069 * 15 14 13 17 17 C 1.50702 * 119.85618 * 179.69630 * 16 15 14 18 18 F 1.39897 * 109.46970 * 269.97937 * 17 16 15 19 19 F 1.39900 * 109.46972 * 29.98065 * 17 16 15 20 20 F 1.39898 * 109.46850 * 149.97835 * 17 16 15 21 21 C 1.38340 * 120.28705 * 359.67821 * 16 15 14 22 22 C 1.37981 * 120.14283 * 0.02562 * 21 16 15 23 23 H 0.97000 * 119.99604 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47366 * 59.99443 * 9 7 2 25 25 H 1.09004 * 109.47373 * 299.99710 * 9 7 2 26 26 H 1.09005 * 109.47105 * 60.00098 * 10 9 7 27 27 H 1.08996 * 109.47204 * 299.99600 * 10 9 7 28 28 H 1.08001 * 119.99800 * 304.99719 * 11 10 9 29 29 H 1.08002 * 119.99775 * 359.97438 * 12 11 10 30 30 H 1.08007 * 120.07361 * 0.02562 * 14 13 12 31 31 H 1.07998 * 119.92961 * 180.29657 * 15 14 13 32 32 H 1.07997 * 119.93132 * 179.97438 * 21 16 15 33 33 H 1.07997 * 120.07143 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4916 -4.9673 -0.0033 12 6 1.7301 -5.8700 -0.9443 13 6 0.9866 -7.1475 -0.9484 14 6 0.0413 -7.4112 0.0436 15 6 -0.6538 -8.6030 0.0305 16 6 -0.4063 -9.5407 -0.9560 17 6 -1.1643 -10.8432 -0.9601 18 9 -0.4642 -11.7926 -0.2081 19 9 -2.4314 -10.6471 -0.4005 20 9 -1.3011 -11.2989 -2.2757 21 6 0.5338 -9.2879 -1.9389 22 6 1.2314 -8.0974 -1.9407 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5576 0.8880 26 1 2.8718 -3.6052 0.8873 27 1 2.8718 -3.6037 -0.8927 28 1 0.7572 -5.1671 0.7631 29 1 2.4643 -5.6700 -1.7108 30 1 -0.1496 -6.6817 0.8168 31 1 -1.3891 -8.8063 0.7949 32 1 0.7227 -10.0242 -2.7061 33 1 1.9653 -7.9014 -2.7083 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038327748.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:22 Heat of formation + Delta-G solvation = -133.064948 kcal Electronic energy + Delta-G solvation = -18975.368604 eV Core-core repulsion = 15357.483739 eV Total energy + Delta-G solvation = -3617.884865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.093 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.31606 -47.83506 -47.78015 -39.51239 -35.61252 -33.37809 -31.79564 -31.25716 -29.19609 -26.29721 -24.50881 -23.21079 -22.20149 -20.72776 -19.22812 -18.66892 -18.60316 -18.40305 -16.33058 -16.13259 -15.23424 -14.96716 -14.63476 -14.51871 -14.50611 -14.24748 -14.03943 -13.94642 -13.61654 -13.53411 -13.19603 -13.02726 -12.69093 -12.15100 -11.80692 -11.41120 -11.27156 -11.04824 -10.82791 -10.58987 -10.34796 -9.89921 -9.54397 -9.22373 -9.17685 -8.41408 -8.03250 -6.06014 -4.09266 0.58442 1.16344 2.50591 2.52032 3.28381 3.34925 3.37824 3.58310 3.64561 3.87703 4.28541 4.40914 4.63125 4.67901 4.79980 5.14556 5.22314 5.29757 5.32262 5.57201 5.77216 5.86628 6.02372 6.08304 6.15519 6.35530 6.49875 6.64388 6.78015 6.97276 7.09546 7.58740 7.71453 7.92661 8.33546 8.97463 9.55304 11.05142 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047643 B = 0.002722 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.566200 B =10284.908614 C =10516.069530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.096 4.096 11 C -0.077 4.077 12 C -0.183 4.183 13 C 0.008 3.992 14 C -0.129 4.129 15 C -0.063 4.063 16 C -0.205 4.205 17 C 0.510 3.490 18 F -0.180 7.180 19 F -0.179 7.179 20 F -0.180 7.180 21 C -0.067 4.067 22 C -0.125 4.125 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -21.089 -2.037 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.095 4.095 12 C -0.201 4.201 13 C 0.007 3.993 14 C -0.147 4.147 15 C -0.081 4.081 16 C -0.207 4.207 17 C 0.456 3.544 18 F -0.161 7.161 19 F -0.160 7.160 20 F -0.161 7.161 21 C -0.085 4.085 22 C -0.143 4.143 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.139 0.861 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.716 -21.011 -2.034 21.121 hybrid contribution 0.181 0.697 -0.049 0.722 sum -0.535 -20.314 -2.084 20.427 Atomic orbital electron populations 1.69964 1.06081 1.26736 1.50559 1.25033 0.94867 0.99335 0.95204 0.86575 0.79830 0.83346 0.78147 1.20624 1.21180 1.19836 1.21236 0.93070 0.90938 1.50983 0.92565 1.19066 0.93811 0.90701 0.97545 1.21001 0.98879 0.92060 1.01384 1.23991 0.95575 0.94607 0.95335 1.21582 1.03207 0.92988 1.02289 1.19458 0.93150 0.93868 0.92776 1.21377 0.96639 0.97053 0.99639 1.20830 0.98066 0.92740 0.96508 1.19891 1.03777 0.94690 1.02299 1.18346 0.77456 0.85173 0.73441 1.93214 1.78849 1.67373 1.76680 1.93183 1.42275 1.95180 1.85391 1.93175 1.95874 1.90504 1.36567 1.20811 0.93656 0.97535 0.96460 1.21238 1.00698 0.93031 0.99290 0.92906 0.96365 0.96361 0.91406 0.92289 0.87258 0.86079 0.84430 0.84877 0.84988 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.64 4.95 -27.89 -0.14 0.50 16 10 C -0.10 -1.84 5.60 -27.88 -0.16 -2.00 16 11 C -0.08 -1.23 8.94 -36.21 -0.32 -1.55 16 12 C -0.18 -2.57 9.52 -37.57 -0.36 -2.93 16 13 C 0.01 0.10 5.87 -105.02 -0.62 -0.52 16 14 C -0.13 -1.57 9.40 -39.19 -0.37 -1.94 16 15 C -0.06 -0.71 9.38 -39.64 -0.37 -1.08 16 16 C -0.21 -2.30 5.46 -104.54 -0.57 -2.87 16 17 C 0.51 5.54 3.36 36.01 0.12 5.66 16 18 F -0.18 -2.00 17.30 2.25 0.04 -1.96 16 19 F -0.18 -2.00 16.45 2.25 0.04 -1.96 16 20 F -0.18 -1.95 16.45 2.25 0.04 -1.92 16 21 C -0.07 -0.70 9.38 -39.64 -0.37 -1.07 16 22 C -0.12 -1.38 9.79 -39.19 -0.38 -1.77 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.10 7.81 -51.93 -0.41 0.70 16 28 H 0.11 1.61 6.04 -52.49 -0.32 1.29 16 29 H 0.12 1.60 7.87 -52.49 -0.41 1.18 16 30 H 0.14 1.55 6.17 -52.48 -0.32 1.23 16 31 H 0.13 1.26 7.59 -52.49 -0.40 0.86 16 32 H 0.13 1.12 7.59 -52.49 -0.40 0.73 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -29.25 302.16 -7.05 -36.30 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.49 Total: -2.70 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.95 Total: -22.81 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 9 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.25 -7.05 -36.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038327748.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.764 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds