Wall clock time and date at job start Mon Mar 30 2020 01:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48503 * 109.47409 * 240.00506 * 3 2 1 5 5 H 1.48506 * 109.46650 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47066 * 120.00137 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.46949 * 179.97438 * 13 11 10 15 15 C 1.39842 * 120.00264 * 180.02562 * 14 13 11 16 16 C 1.38865 * 120.06303 * 359.71965 * 15 14 13 17 17 C 1.38144 * 119.99384 * 179.79344 * 16 15 14 18 18 C 1.38269 * 120.12771 * 0.48783 * 17 16 15 19 19 C 1.38484 * 120.13449 * 359.74431 * 18 17 16 20 20 F 1.35094 * 119.99784 * 180.02562 * 19 18 17 21 21 C 1.38493 * 120.00382 * 0.02562 * 19 18 17 22 22 F 1.35096 * 120.06279 * 179.97438 * 21 19 18 23 23 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 26 26 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 28 28 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 29 29 H 0.97010 * 119.99910 * 359.97438 * 14 13 11 30 30 H 1.07998 * 120.00502 * 0.02800 * 16 15 14 31 31 H 1.08003 * 119.93787 * 180.21342 * 17 16 15 32 32 H 1.08002 * 119.93251 * 179.77217 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 7 2.0004 -7.2976 -0.0015 15 6 2.6996 -8.5087 -0.0015 16 6 4.0882 -8.5103 -0.0074 17 6 4.7774 -9.7075 -0.0030 18 6 4.0873 -10.9057 -0.0029 19 6 2.7024 -10.9103 -0.0018 20 9 2.0309 -12.0825 -0.0012 21 6 2.0059 -9.7132 -0.0014 22 9 0.6549 -9.7163 -0.0009 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1566 -3.4355 -0.0009 27 1 3.3595 -5.9708 -0.8917 28 1 3.3597 -5.9714 0.8883 29 1 1.0303 -7.2975 -0.0007 30 1 4.6294 -7.5757 -0.0116 31 1 5.8575 -9.7077 -0.0041 32 1 4.6293 -11.8398 -0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040230810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:11 Heat of formation + Delta-G solvation = -127.770587 kcal Electronic energy + Delta-G solvation = -19301.876599 eV Core-core repulsion = 15704.141277 eV Total energy + Delta-G solvation = -3597.735322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.42063 -49.51228 -40.91313 -39.87745 -36.55344 -36.01424 -34.41247 -31.49978 -30.98298 -29.53918 -27.49921 -24.70585 -23.78686 -23.01216 -21.51116 -19.69625 -18.96179 -18.42624 -18.06003 -17.35657 -17.34375 -17.15147 -16.72426 -16.36031 -16.14718 -15.97598 -15.75061 -15.20312 -15.06333 -14.89107 -14.34761 -13.96240 -13.84803 -13.75787 -13.00924 -12.96565 -12.74761 -12.67289 -12.38168 -12.24604 -11.52848 -11.23253 -10.97730 -10.80606 -9.92002 -9.72029 -8.60423 -8.29873 -6.46774 0.02076 0.31264 1.44405 1.48119 1.56300 1.60166 1.88416 2.35827 2.56459 2.61716 2.97736 3.05682 3.47685 3.76227 3.82699 3.90027 4.27765 4.37184 4.37673 4.41793 4.91563 5.07683 5.11093 5.16060 5.21090 5.39759 5.43231 5.60740 5.70978 5.82242 6.07393 6.38208 6.63915 6.80206 7.21614 7.39130 8.82063 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.048471 B = 0.003052 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.525550 B = 9171.156345 C = 9728.232131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.089 0.911 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.488 3.512 12 O -0.602 6.602 13 C 0.118 3.882 14 N -0.738 5.738 15 C 0.210 3.790 16 C -0.181 4.181 17 C -0.032 4.032 18 C -0.184 4.184 19 C 0.094 3.906 20 F -0.143 7.143 21 C -0.057 4.057 22 F -0.156 7.156 23 H 0.268 0.732 24 H -0.012 1.012 25 H -0.012 1.012 26 H 0.415 0.585 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.402 0.598 30 H 0.169 0.831 31 H 0.183 0.817 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.375 -18.072 0.001 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.107 0.893 9 C 0.142 3.858 10 N -0.347 5.347 11 C 0.275 3.725 12 O -0.484 6.484 13 C -0.008 4.008 14 N -0.368 5.368 15 C 0.103 3.897 16 C -0.204 4.204 17 C -0.050 4.050 18 C -0.205 4.205 19 C 0.073 3.927 20 F -0.122 7.122 21 C -0.082 4.082 22 F -0.135 7.135 23 H 0.077 0.923 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.252 0.748 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.239 0.761 30 H 0.187 0.813 31 H 0.201 0.799 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 15.415 -17.923 -0.002 23.640 hybrid contribution -1.313 0.741 0.005 1.507 sum 14.103 -17.181 0.003 22.228 Atomic orbital electron populations 1.70136 1.08383 1.28652 1.49973 1.26086 0.95730 1.04028 0.93871 0.85203 0.77874 0.76514 0.79616 1.18490 1.21486 1.18498 1.21608 0.94516 0.90353 1.52892 0.89272 1.18571 0.88723 0.84299 0.94198 1.46050 1.11621 1.05020 1.71983 1.21327 0.89720 0.85467 0.76015 1.90666 1.19576 1.85236 1.52919 1.21275 0.92859 0.79841 1.06860 1.44533 1.09315 1.02006 1.80959 1.17848 0.93007 0.83386 0.95412 1.21130 0.89237 1.01821 1.08184 1.21321 1.02205 0.89210 0.92296 1.21223 0.89428 1.02192 1.07607 1.17782 0.91666 0.78780 1.04443 1.91471 1.81184 1.45528 1.94030 1.17507 0.76861 0.93700 1.20084 1.91411 1.29463 1.97241 1.95358 0.92295 0.99418 0.99425 0.74841 0.85355 0.85375 0.76118 0.81339 0.79933 0.81661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.98 40.87 29.54 68.60 2.03 42.90 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -28.84 9.28 25.60 0.24 -28.60 16 8 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 9 C 0.26 13.89 5.43 85.63 0.46 14.36 16 10 N -0.70 -26.39 5.55 -466.79 -2.59 -28.98 16 11 C 0.49 17.55 7.90 87.66 0.69 18.24 16 12 O -0.60 -28.38 15.67 -3.01 -0.05 -28.43 16 13 C 0.12 2.58 5.39 85.63 0.46 3.04 16 14 N -0.74 -19.47 5.71 -342.93 -1.96 -21.43 16 15 C 0.21 4.74 6.66 38.20 0.25 5.00 16 16 C -0.18 -2.50 9.31 22.40 0.21 -2.29 16 17 C -0.03 -0.32 10.04 22.25 0.22 -0.09 16 18 C -0.18 -2.60 10.02 22.34 0.22 -2.38 16 19 C 0.09 2.13 7.30 22.39 0.16 2.29 16 20 F -0.14 -3.65 17.18 44.97 0.77 -2.88 16 21 C -0.06 -1.52 7.32 22.51 0.16 -1.35 16 22 F -0.16 -5.06 16.55 44.97 0.74 -4.32 16 23 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 24 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.41 12.00 8.32 -92.71 -0.77 11.23 16 27 H 0.13 1.93 7.94 -2.39 -0.02 1.91 16 28 H 0.13 1.93 7.96 -2.39 -0.02 1.91 16 29 H 0.40 13.24 6.93 -92.70 -0.64 12.60 16 30 H 0.17 1.30 6.73 -2.91 -0.02 1.28 16 31 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 32 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -74.95 295.09 2.56 -72.39 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.23 Total: 17.06 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 3.56 Total: 8.81 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.26 Total: -105.52 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 1.52 Total: -7.20 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -74.95 2.56 -72.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040230810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.381 kcal (2) G-P(sol) polarization free energy of solvation -74.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds