Wall clock time and date at job start Mon Mar 30 2020 01:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47122 * 2 1 4 4 C 1.46504 * 120.00135 * 270.00383 * 3 2 1 5 5 C 1.50702 * 109.47025 * 269.99957 * 4 3 2 6 6 H 1.08007 * 119.99895 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00115 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99998 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99985 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47203 * 89.99861 * 9 7 5 11 11 H 1.48502 * 109.47178 * 210.00097 * 9 7 5 12 12 H 1.48503 * 109.46912 * 329.99874 * 9 7 5 13 13 C 1.34775 * 120.00300 * 90.00346 * 3 2 1 14 14 O 1.21275 * 120.00279 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99776 * 359.97438 * 13 3 2 16 16 S 1.81000 * 109.47042 * 180.02562 * 15 13 3 17 17 C 1.76199 * 99.99871 * 180.02562 * 16 15 13 18 18 N 1.31650 * 126.08723 * 359.68905 * 17 16 15 19 19 C 1.33346 * 109.69224 * 179.86811 * 18 17 16 20 20 N 1.30592 * 109.13923 * 0.40028 * 19 18 17 21 21 N 1.35073 * 126.08821 * 180.02562 * 17 16 15 22 22 H 0.97003 * 126.83487 * 359.94938 * 21 17 16 23 23 H 1.08999 * 109.47090 * 299.99770 * 1 2 3 24 24 H 1.08997 * 109.47146 * 60.00109 * 1 2 3 25 25 H 1.09002 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47525 * 240.00065 * 2 1 3 27 27 H 1.09002 * 109.47581 * 120.00057 * 2 1 3 28 28 H 1.09001 * 109.46989 * 29.99110 * 4 3 2 29 29 H 1.09000 * 109.47446 * 149.99933 * 4 3 2 30 30 H 0.97004 * 119.99579 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46904 * 60.00309 * 15 13 3 32 32 H 1.09005 * 109.47194 * 300.00350 * 15 13 3 33 33 H 1.08002 * 125.43416 * 180.13244 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 5.3912 2.1835 -3.2575 9 14 3.0127 3.4353 -3.9292 10 1 3.1162 4.8556 -3.5081 11 1 3.4055 3.3121 -5.3560 12 1 1.6130 2.9693 -3.7592 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1671 15 6 1.9914 1.3064 2.4723 16 16 2.3830 2.4155 3.8480 17 6 2.0099 1.3594 5.2082 18 7 1.5668 0.1222 5.1305 19 6 1.3973 -0.3723 6.3572 20 7 1.7196 0.5396 7.2347 21 7 2.1214 1.6772 6.5162 22 1 2.4203 2.5228 6.8858 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1411 -1.1384 30 1 5.7170 2.5734 -4.0838 31 1 2.6213 0.4187 2.5302 32 1 0.9433 1.0126 2.5299 33 1 1.0450 -1.3667 6.5884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048583509.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:31 Heat of formation + Delta-G solvation = 56.628362 kcal Electronic energy + Delta-G solvation = -18025.156310 eV Core-core repulsion = 15021.550264 eV Total energy + Delta-G solvation = -3003.606046 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07592 -39.30182 -35.58127 -32.86416 -32.71013 -31.50367 -30.61191 -29.96425 -27.28670 -23.59368 -23.06810 -22.37268 -22.20705 -19.39634 -18.29061 -16.99744 -16.71373 -16.52901 -15.82449 -15.52769 -15.10293 -14.76495 -14.16362 -13.92057 -13.58201 -13.47636 -12.83590 -12.46585 -12.32261 -12.15892 -11.86541 -11.52649 -11.02566 -10.89167 -10.74611 -10.57946 -10.52591 -10.45265 -10.36511 -10.20951 -9.61227 -9.32412 -8.62854 -7.97061 -7.83186 -6.12534 -4.12177 0.80682 1.26095 1.84267 2.64717 2.68981 3.06722 3.26434 3.32211 3.34269 3.65835 4.35891 4.41499 4.57321 4.73894 5.04668 5.17884 5.20808 5.41643 5.49742 5.65990 5.87827 5.94792 6.09582 6.16697 6.35457 6.60323 6.60554 6.85218 7.18361 7.54688 7.71405 8.03554 8.39615 8.69582 8.90787 9.46859 11.00676 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.004333 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.001854 B = 6460.877615 C = 6839.872347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.582 5.582 4 C 0.217 3.783 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.524 3.476 14 O -0.528 6.528 15 C -0.138 4.138 16 S 0.086 5.914 17 C 0.249 3.751 18 N -0.546 5.546 19 C 0.212 3.788 20 N -0.318 5.318 21 N -0.466 5.466 22 H 0.444 0.556 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -4.611 14.577 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.313 5.313 4 C 0.097 3.903 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.308 3.692 14 O -0.406 6.406 15 C -0.290 4.290 16 S 0.312 5.688 17 C -0.137 4.137 18 N -0.279 5.279 19 C -0.093 4.093 20 N -0.148 5.148 21 N -0.187 5.187 22 H 0.291 0.709 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.736 -3.211 14.850 18.044 hybrid contribution -0.676 -0.385 -0.457 0.902 sum -10.412 -3.596 14.393 18.124 Atomic orbital electron populations 1.22224 0.96447 1.01885 1.02263 1.21552 0.93660 0.83383 1.03589 1.47848 1.63349 1.13588 1.06491 1.19727 0.97579 0.93425 0.79607 1.21306 0.95223 1.33217 1.07288 0.90638 1.24847 0.94993 0.95745 0.97315 1.69896 1.15109 1.44839 1.23523 0.86860 0.81430 0.81629 0.79833 1.19853 1.21027 1.19041 1.19360 0.79005 0.86671 0.84126 1.90723 1.45731 1.17622 1.86505 1.23905 1.08175 1.02650 0.94288 1.86568 1.81274 1.11301 0.89629 1.27033 0.98639 0.96587 0.91414 1.71095 1.24451 1.06708 1.25653 1.26041 0.97471 1.00120 0.85694 1.77897 1.22928 0.94100 1.19891 1.47848 1.52721 1.14788 1.03314 0.70931 0.92926 0.92124 0.91702 0.89314 0.91014 0.94878 0.94382 0.92491 0.85762 0.85961 0.76359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 37.16 0.38 -1.63 16 2 C 0.10 1.48 5.93 -4.04 -0.02 1.46 16 3 N -0.58 -11.22 2.46 -175.05 -0.43 -11.65 16 4 C 0.22 5.07 4.23 -5.19 -0.02 5.05 16 5 C -0.53 -14.83 9.94 -34.44 -0.34 -15.17 16 6 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 9 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 13 C 0.52 9.98 7.69 -10.98 -0.08 9.90 16 14 O -0.53 -12.16 15.44 5.56 0.09 -12.08 16 15 C -0.14 -1.95 4.25 36.01 0.15 -1.80 16 16 S 0.09 1.15 21.45 -107.50 -2.31 -1.15 16 17 C 0.25 3.09 8.31 -89.38 -0.74 2.34 16 18 N -0.55 -6.93 10.57 -14.69 -0.16 -7.09 16 19 C 0.21 2.31 13.02 -91.82 -1.20 1.12 16 20 N -0.32 -3.75 12.78 29.29 0.37 -3.38 16 21 N -0.47 -5.08 7.47 30.45 0.23 -4.86 16 22 H 0.44 3.50 8.96 -182.35 -1.63 1.87 16 23 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 28 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 29 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.12 1.64 7.40 -51.92 -0.38 1.26 16 32 H 0.12 1.49 7.19 -51.91 -0.37 1.12 16 33 H 0.22 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -34.32 301.39 -8.64 -42.96 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.10 Total: -0.58 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.98 Total: 3.28 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.79 Total: -53.35 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.31 Total: -1.15 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.32 -8.64 -42.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048583509.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.587 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds