Wall clock time and date at job start Mon Mar 30 2020 01:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46919 * 2 1 4 4 C 1.46499 * 119.99925 * 269.99853 * 3 2 1 5 5 C 1.50697 * 109.47340 * 270.00235 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47231 * 89.99796 * 9 7 5 11 11 H 1.48489 * 109.47238 * 210.00283 * 9 7 5 12 12 H 1.48505 * 109.46935 * 330.00024 * 9 7 5 13 13 C 1.34777 * 119.99880 * 90.00602 * 3 2 1 14 14 O 1.21583 * 119.99947 * 179.97438 * 13 3 2 15 15 N 1.34777 * 119.99726 * 0.26799 * 13 3 2 16 16 C 1.39079 * 119.99724 * 179.72728 * 15 13 3 17 17 N 1.29892 * 125.65786 * 0.02562 * 16 15 13 18 18 N 1.26242 * 117.66405 * 179.97438 * 17 16 15 19 19 C 1.29504 * 116.58371 * 0.02562 * 18 17 16 20 20 C 1.50696 * 126.14597 * 180.02562 * 19 18 17 21 21 S 1.71313 * 125.65689 * 179.72106 * 16 15 13 22 22 H 1.09002 * 109.47171 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.47071 * 299.99819 * 1 2 3 24 24 H 1.09004 * 109.47223 * 59.99467 * 1 2 3 25 25 H 1.08994 * 109.47033 * 240.00502 * 2 1 3 26 26 H 1.09001 * 109.47466 * 120.00073 * 2 1 3 27 27 H 1.08994 * 109.47013 * 30.00340 * 4 3 2 28 28 H 1.09005 * 109.46881 * 150.00475 * 4 3 2 29 29 H 0.96994 * 119.99317 * 180.02562 * 8 7 5 30 30 H 0.97000 * 120.00483 * 359.73178 * 15 13 3 31 31 H 1.09000 * 109.47449 * 90.02313 * 20 19 18 32 32 H 1.08999 * 109.47584 * 210.02386 * 20 19 18 33 33 H 1.09003 * 109.47502 * 330.02129 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 5.3913 2.1835 -3.2574 9 14 3.0134 3.4372 -3.9280 10 1 3.1172 4.8571 -3.5058 11 1 3.4063 3.3151 -5.3548 12 1 1.6135 2.9715 -3.7585 13 6 2.2430 2.0166 1.1672 14 8 2.6487 3.1627 1.1672 15 7 2.0236 1.3793 2.3344 16 6 2.2609 2.0330 3.5388 17 7 2.6920 3.2516 3.6669 18 7 2.8546 3.6958 4.8373 19 6 2.5740 2.8864 5.8086 20 6 2.6881 3.1905 7.2801 21 16 2.0262 1.3670 5.0996 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.5817 1.6878 -2.0283 28 1 2.0955 3.1411 -1.1383 29 1 5.7174 2.5746 -4.0829 30 1 1.7003 0.4648 2.3344 31 1 1.7463 3.6049 7.6397 32 1 2.9127 2.2732 7.8244 33 1 3.4880 3.9133 7.4409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049028782.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:32 Heat of formation + Delta-G solvation = 26.875883 kcal Electronic energy + Delta-G solvation = -18389.544328 eV Core-core repulsion = 15384.648117 eV Total energy + Delta-G solvation = -3004.896210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.42035 -41.24981 -37.34633 -36.51485 -34.81159 -33.31921 -31.90988 -30.11101 -28.85780 -26.31158 -24.61972 -24.39803 -22.38671 -21.08495 -19.75101 -19.14403 -18.98025 -18.12533 -17.30899 -16.81369 -16.35095 -15.85860 -15.38396 -15.12329 -14.83253 -14.52941 -14.25050 -14.11533 -13.81521 -13.50287 -13.38778 -13.21346 -12.65007 -12.48296 -12.39769 -12.09779 -12.03380 -11.76345 -11.65834 -11.36005 -10.84149 -10.81143 -10.54908 -9.95530 -9.43373 -8.34847 -6.40203 -0.52685 -0.49458 0.13549 1.30837 1.37935 1.40910 1.45900 1.52409 2.15834 2.30590 2.63969 3.00153 3.34373 3.76175 3.98108 4.23695 4.30155 4.46345 4.69514 4.72421 4.78034 4.79844 4.92824 4.94951 4.95873 5.16290 5.33579 5.43165 5.44926 5.66066 6.22516 6.60893 6.72232 7.20249 7.38842 7.71717 8.82346 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.004916 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.144405 B = 5694.003865 C = 6281.650518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.093 3.907 3 N -0.603 5.603 4 C 0.243 3.757 5 C -0.538 4.538 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.946 5.946 9 Si 0.947 3.053 10 H -0.281 1.281 11 H -0.273 1.273 12 H -0.233 1.233 13 C 0.690 3.310 14 O -0.582 6.582 15 N -0.623 5.623 16 C 0.222 3.778 17 N -0.332 5.332 18 N -0.279 5.279 19 C 0.002 3.998 20 C -0.069 4.069 21 S 0.194 5.806 22 H 0.102 0.898 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.017 0.983 29 H 0.269 0.731 30 H 0.436 0.564 31 H 0.111 0.889 32 H 0.115 0.885 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.920 -8.811 19.526 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.338 5.338 4 C 0.120 3.880 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.155 1.155 13 C 0.389 3.611 14 O -0.457 6.457 15 N -0.282 5.282 16 C -0.150 4.150 17 N -0.176 5.176 18 N -0.115 5.115 19 C -0.281 4.281 20 C -0.130 4.130 21 S 0.433 5.567 22 H 0.121 0.879 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.279 0.721 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.438 -7.729 19.051 24.561 hybrid contribution 0.330 0.290 -1.119 1.202 sum -13.109 -7.439 17.931 23.424 Atomic orbital electron populations 1.22211 0.93487 1.04143 1.02268 1.21867 0.95952 0.80669 1.04355 1.47269 1.67287 1.15430 1.03782 1.19300 0.95031 0.92803 0.80862 1.21568 0.97135 1.32272 1.06702 0.95429 1.25839 0.96735 0.97074 0.98959 1.70051 1.17471 1.46509 1.24523 0.85728 0.80686 0.78823 0.77778 1.20679 1.19812 1.15541 1.16154 0.79350 0.84644 0.80976 1.91015 1.50626 1.18480 1.85529 1.42001 1.68346 1.17421 1.00383 1.25944 1.01327 0.94038 0.93676 1.71517 1.19860 1.10774 1.15405 1.71399 1.17433 1.29121 0.93540 1.30888 1.02212 0.91025 1.03984 1.20666 1.05780 1.05295 0.81256 1.84038 1.63450 1.16188 0.92975 0.87909 0.92574 0.92945 0.89480 0.89224 0.92063 0.96471 0.92249 0.72097 0.87060 0.86617 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.51 16 2 C 0.09 2.55 5.90 86.38 0.51 3.05 16 3 N -0.60 -24.65 2.46 -844.21 -2.07 -26.73 16 4 C 0.24 11.92 4.23 85.63 0.36 12.28 16 5 C -0.54 -32.17 9.94 25.60 0.25 -31.92 16 6 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 7 C 0.01 0.72 5.47 84.66 0.46 1.18 16 8 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 9 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 10 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.23 -9.74 6.54 99.48 0.65 -9.09 16 13 C 0.69 30.42 8.24 179.05 1.48 31.89 16 14 O -0.58 -32.85 14.60 -3.98 -0.06 -32.91 16 15 N -0.62 -20.15 5.27 -326.97 -1.72 -21.88 16 16 C 0.22 7.34 8.14 179.10 1.46 8.80 16 17 N -0.33 -13.99 9.73 -59.09 -0.58 -14.56 16 18 N -0.28 -9.87 11.65 -47.69 -0.56 -10.43 16 19 C 0.00 0.04 7.80 88.45 0.69 0.73 16 20 C -0.07 -0.74 10.51 71.23 0.75 0.00 16 21 S 0.19 3.73 23.31 -56.49 -1.32 2.41 16 22 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 26 H 0.09 1.85 6.36 -2.39 -0.02 1.84 16 27 H 0.06 2.68 7.13 -2.39 -0.02 2.66 16 28 H 0.02 0.92 6.85 -2.38 -0.02 0.91 16 29 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 30 H 0.44 9.56 6.55 -92.71 -0.61 8.95 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -91.14 299.84 3.06 -88.09 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 0.48 Total: 6.04 kcal Atomic # 6 Polarization: 16.82 SS G_CDS: 6.70 Total: 23.52 kcal Atomic # 7 Polarization: -129.51 SS G_CDS: -4.63 Total: -134.14 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.06 Total: -32.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.32 Total: 2.41 kcal Total: -91.14 3.06 -88.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049028782.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.963 kcal (2) G-P(sol) polarization free energy of solvation -91.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds