Wall clock time and date at job start Mon Mar 30 2020 01:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.47128 * 240.00523 * 3 2 1 5 5 H 1.48499 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47030 * 120.00276 * 3 2 1 7 7 C 1.37870 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99646 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00394 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99647 * 180.27099 * 12 11 10 15 15 C 1.40192 * 119.99766 * 174.08799 * 14 12 11 16 16 C 1.38773 * 120.05451 * 335.22861 * 15 14 12 17 17 C 1.38155 * 119.98410 * 179.67946 * 16 15 14 18 18 C 1.38483 * 120.07718 * 0.61609 * 17 16 15 19 19 F 1.35103 * 119.94298 * 179.70334 * 18 17 16 20 20 C 1.38445 * 120.10562 * 359.68370 * 18 17 16 21 21 C 1.38314 * 120.02121 * 359.97438 * 20 18 17 22 22 F 1.35096 * 120.03982 * 180.02562 * 21 20 18 23 23 H 0.97004 * 120.00339 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47394 * 59.99520 * 9 7 2 25 25 H 1.09004 * 109.46744 * 300.00191 * 9 7 2 26 26 H 1.08996 * 109.46937 * 59.99772 * 10 9 7 27 27 H 1.08999 * 109.46614 * 299.99819 * 10 9 7 28 28 H 0.96999 * 120.00068 * 359.97438 * 11 10 9 29 29 H 0.96996 * 120.00182 * 354.09373 * 14 12 11 30 30 H 1.08000 * 120.01055 * 359.97438 * 16 15 14 31 31 H 1.07995 * 119.96572 * 180.29590 * 17 16 15 32 32 H 1.08003 * 119.98978 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5128 -4.9307 -0.0012 12 6 2.1868 -6.0979 -0.0027 13 8 3.4027 -6.0979 -0.0040 14 7 1.5128 -7.2651 -0.0076 15 6 2.2086 -8.4756 -0.1342 16 6 3.4520 -8.5015 -0.7498 17 6 4.1393 -9.6941 -0.8679 18 6 3.5833 -10.8664 -0.3839 19 9 4.2551 -12.0322 -0.5061 20 6 2.3402 -10.8457 0.2253 21 6 1.6516 -9.6529 0.3521 22 9 0.4388 -9.6321 0.9470 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5570 0.8897 26 1 2.8726 -3.6046 0.8877 27 1 2.8712 -3.6038 -0.8923 28 1 0.5428 -4.9307 0.0003 29 1 0.5465 -7.2676 0.0763 30 1 3.8845 -7.5888 -1.1323 31 1 5.1091 -9.7131 -1.3427 32 1 1.9085 -11.7610 0.6025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:14 Heat of formation + Delta-G solvation = -98.585758 kcal Electronic energy + Delta-G solvation = -19354.408341 eV Core-core repulsion = 15757.938568 eV Total energy + Delta-G solvation = -3596.469773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.21990 -49.12434 -40.58351 -38.51954 -35.26686 -34.64365 -32.94246 -31.05030 -30.16409 -28.66125 -24.94030 -23.72168 -22.81260 -21.16116 -20.83677 -18.88702 -18.22474 -17.72985 -16.94756 -16.38696 -16.21115 -15.88280 -15.54682 -15.36727 -14.90705 -14.65036 -14.58929 -14.20529 -13.72934 -13.55549 -13.12322 -12.63586 -12.41204 -12.31713 -11.80399 -11.28534 -11.09220 -10.70552 -10.63609 -10.38668 -10.07471 -9.66506 -9.36331 -9.22780 -8.74830 -8.46383 -8.10435 -6.14436 -4.17846 0.71922 0.82104 2.55476 2.98511 3.28228 3.32438 3.35504 3.43232 3.65752 4.11546 4.22596 4.38063 4.43817 4.63689 4.93591 5.21843 5.22846 5.51837 5.65555 5.85052 5.99410 6.11873 6.17561 6.25702 6.63275 6.66872 6.74392 6.88152 7.46052 7.53621 7.83333 8.01579 8.22022 8.59084 8.87841 9.47416 10.97106 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046434 B = 0.003066 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.855313 B = 9130.271907 C = 9658.940671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.137 3.863 11 N -0.727 5.727 12 C 0.699 3.301 13 O -0.577 6.577 14 N -0.685 5.685 15 C 0.145 3.855 16 C -0.080 4.080 17 C -0.136 4.136 18 C 0.097 3.903 19 F -0.136 7.136 20 C -0.168 4.168 21 C 0.086 3.914 22 F -0.131 7.131 23 H 0.263 0.737 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.397 0.603 29 H 0.411 0.589 30 H 0.170 0.830 31 H 0.145 0.855 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 -20.454 -1.196 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.015 3.985 11 N -0.379 5.379 12 C 0.399 3.601 13 O -0.454 6.454 14 N -0.332 5.332 15 C 0.047 3.953 16 C -0.100 4.100 17 C -0.155 4.155 18 C 0.076 3.924 19 F -0.115 7.115 20 C -0.188 4.188 21 C 0.063 3.937 22 F -0.110 7.110 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.231 0.769 29 H 0.247 0.753 30 H 0.188 0.812 31 H 0.163 0.837 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.942 -20.195 -1.184 20.442 hybrid contribution -0.762 0.677 0.238 1.047 sum 2.179 -19.518 -0.946 19.662 Atomic orbital electron populations 1.69939 1.06116 1.27096 1.50111 1.24991 0.94899 0.99452 0.94879 0.86555 0.79513 0.82553 0.78823 1.20058 1.21229 1.20070 1.20984 0.93247 0.90266 1.51744 0.92196 1.19334 0.94220 0.90961 0.97958 1.21733 0.95800 0.79873 1.01080 1.45622 1.10271 1.05096 1.76954 1.16009 0.85650 0.80189 0.78215 1.90862 1.11342 1.86003 1.57234 1.42674 1.10619 1.03361 1.76549 1.17611 0.94601 0.84028 0.99080 1.21368 0.92767 0.99513 0.96394 1.21175 1.01736 0.90594 1.02024 1.17255 0.91175 0.81908 1.02013 1.91512 1.79565 1.46207 1.94168 1.20768 0.95234 0.98205 1.04554 1.16921 0.83453 0.93013 1.00320 1.91504 1.40928 1.97139 1.81418 0.92717 0.95857 0.95871 0.92330 0.92273 0.76905 0.75328 0.81241 0.83709 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.14 2.75 5.61 -4.04 -0.02 2.72 16 11 N -0.73 -11.74 5.56 -65.23 -0.36 -12.11 16 12 C 0.70 11.14 8.37 -86.92 -0.73 10.41 16 13 O -0.58 -10.87 13.51 5.28 0.07 -10.80 16 14 N -0.69 -8.55 5.33 -14.15 -0.08 -8.63 16 15 C 0.15 1.78 6.44 -83.54 -0.54 1.24 16 16 C -0.08 -0.97 8.72 -39.41 -0.34 -1.32 16 17 C -0.14 -1.39 10.02 -39.52 -0.40 -1.79 16 18 C 0.10 0.99 7.30 -39.41 -0.29 0.70 16 19 F -0.14 -1.41 17.26 2.25 0.04 -1.37 16 20 C -0.17 -1.63 10.00 -39.48 -0.39 -2.03 16 21 C 0.09 0.94 7.31 -39.26 -0.29 0.65 16 22 F -0.13 -1.43 16.81 2.25 0.04 -1.40 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.40 5.45 8.49 -40.82 -0.35 5.10 16 29 H 0.41 4.04 8.47 -40.82 -0.35 3.70 16 30 H 0.17 2.34 5.79 -52.49 -0.30 2.04 16 31 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -30.02 293.51 -6.77 -36.79 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.07 Total: 4.12 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.55 Total: -2.11 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.30 Total: -45.59 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.02 -6.77 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.794 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds