Wall clock time and date at job start Mon Mar 30 2020 01:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48503 * 109.47128 * 240.00523 * 3 2 1 5 5 H 1.48499 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47030 * 120.00276 * 3 2 1 7 7 C 1.37870 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00241 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99646 * 179.97438 * 11 10 9 13 13 O 1.21592 * 120.00394 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99647 * 180.27099 * 12 11 10 15 15 C 1.40192 * 119.99766 * 174.08799 * 14 12 11 16 16 C 1.38773 * 120.05451 * 335.22861 * 15 14 12 17 17 C 1.38155 * 119.98410 * 179.67946 * 16 15 14 18 18 C 1.38483 * 120.07718 * 0.61609 * 17 16 15 19 19 F 1.35103 * 119.94298 * 179.70334 * 18 17 16 20 20 C 1.38445 * 120.10562 * 359.68370 * 18 17 16 21 21 C 1.38314 * 120.02121 * 359.97438 * 20 18 17 22 22 F 1.35096 * 120.03982 * 180.02562 * 21 20 18 23 23 H 0.97004 * 120.00339 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47394 * 59.99520 * 9 7 2 25 25 H 1.09004 * 109.46744 * 300.00191 * 9 7 2 26 26 H 1.08996 * 109.46937 * 59.99772 * 10 9 7 27 27 H 1.08999 * 109.46614 * 299.99819 * 10 9 7 28 28 H 0.96999 * 120.00068 * 359.97438 * 11 10 9 29 29 H 0.96996 * 120.00182 * 354.09373 * 14 12 11 30 30 H 1.08000 * 120.01055 * 359.97438 * 16 15 14 31 31 H 1.07995 * 119.96572 * 180.29590 * 17 16 15 32 32 H 1.08003 * 119.98978 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5128 -4.9307 -0.0012 12 6 2.1868 -6.0979 -0.0027 13 8 3.4027 -6.0979 -0.0040 14 7 1.5128 -7.2651 -0.0076 15 6 2.2086 -8.4756 -0.1342 16 6 3.4520 -8.5015 -0.7498 17 6 4.1393 -9.6941 -0.8679 18 6 3.5833 -10.8664 -0.3839 19 9 4.2551 -12.0322 -0.5061 20 6 2.3402 -10.8457 0.2253 21 6 1.6516 -9.6529 0.3521 22 9 0.4388 -9.6321 0.9470 23 1 -0.4851 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5570 0.8897 26 1 2.8726 -3.6046 0.8877 27 1 2.8712 -3.6038 -0.8923 28 1 0.5428 -4.9307 0.0003 29 1 0.5465 -7.2676 0.0763 30 1 3.8845 -7.5888 -1.1323 31 1 5.1091 -9.7131 -1.3427 32 1 1.9085 -11.7610 0.6025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138242.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:14 Heat of formation + Delta-G solvation = -117.528602 kcal Electronic energy + Delta-G solvation = -19355.229765 eV Core-core repulsion = 15757.938568 eV Total energy + Delta-G solvation = -3597.291196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.08105 -49.94617 -41.74822 -39.54043 -36.76517 -35.83830 -34.84426 -31.96766 -31.70037 -29.86282 -26.73562 -24.71213 -23.83926 -22.83194 -22.08876 -19.99030 -19.18105 -18.79499 -18.43905 -17.82330 -17.12335 -16.77906 -16.66250 -16.47919 -16.32299 -16.22571 -15.54645 -15.34450 -15.18819 -14.88983 -14.27360 -14.07352 -13.56398 -13.35754 -13.22290 -12.91926 -12.66109 -12.53178 -12.24928 -11.69281 -11.60789 -11.45979 -11.16826 -10.59514 -10.13941 -10.07155 -9.08541 -8.23397 -6.33592 -0.15970 -0.03184 1.38153 1.44942 1.45401 1.53808 1.85953 2.41333 2.42568 2.79982 3.08123 3.12015 3.26904 3.57877 3.84410 4.07504 4.30990 4.46207 4.52171 4.66590 4.86619 4.88544 4.96875 5.05997 5.22931 5.26586 5.47783 5.59666 5.74373 5.76127 5.83468 6.16558 6.79372 6.85085 7.32767 7.36042 8.88251 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046434 B = 0.003066 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.855313 B = 9130.271907 C = 9658.940671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.723 5.723 12 C 0.702 3.298 13 O -0.606 6.606 14 N -0.672 5.672 15 C 0.126 3.874 16 C -0.092 4.092 17 C -0.129 4.129 18 C 0.099 3.901 19 F -0.134 7.134 20 C -0.158 4.158 21 C 0.088 3.912 22 F -0.130 7.130 23 H 0.265 0.735 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.410 0.590 29 H 0.424 0.576 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.448 -21.552 -1.122 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.015 4.015 10 C 0.035 3.965 11 N -0.377 5.377 12 C 0.402 3.598 13 O -0.486 6.486 14 N -0.319 5.319 15 C 0.028 3.972 16 C -0.113 4.113 17 C -0.148 4.148 18 C 0.079 3.921 19 F -0.113 7.113 20 C -0.177 4.177 21 C 0.065 3.935 22 F -0.109 7.109 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.246 0.754 29 H 0.262 0.738 30 H 0.169 0.831 31 H 0.182 0.818 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.323 -21.343 -1.111 21.628 hybrid contribution -0.887 0.888 0.209 1.272 sum 2.436 -20.455 -0.902 20.619 Atomic orbital electron populations 1.70047 1.07555 1.28050 1.51030 1.25853 0.95757 1.03071 0.94459 0.85520 0.78302 0.78202 0.79166 1.19253 1.20809 1.19355 1.21445 0.93716 0.91825 1.51510 0.92033 1.19140 0.94295 0.91632 0.96465 1.21190 0.94640 0.80340 1.00322 1.45274 1.10758 1.04234 1.77392 1.15990 0.85243 0.80697 0.77821 1.90851 1.12759 1.86562 1.58472 1.42398 1.11187 1.02508 1.75849 1.17779 0.95038 0.84114 1.00253 1.21232 0.93161 0.99596 0.97314 1.21319 1.02238 0.89924 1.01344 1.17285 0.91288 0.81820 1.01745 1.91524 1.79563 1.46061 1.94127 1.20997 0.94752 0.98607 1.03379 1.16894 0.83514 0.92839 1.00215 1.91511 1.40858 1.97131 1.81389 0.92576 0.97184 0.97310 0.93231 0.92903 0.75436 0.73803 0.83078 0.81834 0.80859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 13.29 21.44 0.28 -53.19 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -29.62 9.11 25.60 0.23 -29.39 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 9 C 0.02 1.07 5.09 29.85 0.15 1.23 16 10 C 0.16 6.41 5.61 86.38 0.48 6.90 16 11 N -0.72 -23.26 5.56 -478.54 -2.66 -25.92 16 12 C 0.70 22.20 8.37 179.05 1.50 23.70 16 13 O -0.61 -22.99 13.51 -4.00 -0.05 -23.05 16 14 N -0.67 -16.23 5.33 -316.93 -1.69 -17.92 16 15 C 0.13 2.96 6.44 38.12 0.25 3.20 16 16 C -0.09 -2.19 8.72 22.38 0.20 -2.00 16 17 C -0.13 -2.43 10.02 22.31 0.22 -2.21 16 18 C 0.10 1.79 7.30 22.38 0.16 1.95 16 19 F -0.13 -2.44 17.26 44.97 0.78 -1.67 16 20 C -0.16 -2.66 10.00 22.34 0.22 -2.44 16 21 C 0.09 1.76 7.31 22.48 0.16 1.92 16 22 F -0.13 -2.58 16.81 44.97 0.76 -1.83 16 23 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.41 11.09 8.49 -92.71 -0.79 10.30 16 29 H 0.42 7.85 8.47 -92.71 -0.79 7.06 16 30 H 0.15 4.23 5.79 -2.91 -0.02 4.21 16 31 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -63.32 293.51 3.10 -60.22 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -0.39 Total: 14.85 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 4.05 Total: 3.73 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.06 Total: -97.03 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.05 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 1.53 Total: -3.49 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -63.32 3.10 -60.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138242.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.304 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds