Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46730 * 2 1 4 4 C 1.53002 * 110.53634 * 302.82623 * 3 2 1 5 5 N 1.47307 * 110.73482 * 65.74968 * 3 2 1 6 6 C 1.34527 * 106.62199 * 118.36426 * 5 3 2 7 7 O 1.21539 * 123.77639 * 180.21073 * 6 5 3 8 8 N 1.33797 * 112.45590 * 0.38458 * 6 5 3 9 9 C 1.46500 * 124.17856 * 179.86015 * 8 6 5 10 10 C 1.50706 * 109.46949 * 269.70353 * 9 8 6 11 11 O 1.21207 * 120.00189 * 359.72242 * 10 9 8 12 12 O 1.34310 * 119.99701 * 179.97438 * 10 9 8 13 13 C 1.34915 * 117.00237 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99912 * 359.97438 * 13 12 10 15 15 C 1.38749 * 120.00590 * 180.02562 * 13 12 10 16 16 N 1.31442 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00435 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47272 * 59.99803 * 17 15 13 19 19 H 1.48494 * 109.47303 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47008 * 299.99841 * 17 15 13 21 21 C 1.34767 * 111.64414 * 359.59881 * 8 6 5 22 22 O 1.21229 * 127.15792 * 180.19347 * 21 8 6 23 23 H 1.08999 * 109.46865 * 299.99837 * 1 2 3 24 24 H 1.08994 * 109.47180 * 60.00415 * 1 2 3 25 25 H 1.09005 * 109.46740 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47360 * 239.99975 * 2 1 3 27 27 H 1.09001 * 109.47543 * 119.99531 * 2 1 3 28 28 H 1.08994 * 109.47266 * 297.87296 * 4 3 2 29 29 H 1.08998 * 109.46699 * 57.87577 * 4 3 2 30 30 H 1.09005 * 109.47068 * 177.87048 * 4 3 2 31 31 H 0.96995 * 126.69358 * 298.62846 * 5 3 2 32 32 H 1.09000 * 109.47175 * 149.70379 * 9 8 6 33 33 H 1.09001 * 109.47297 * 29.69886 * 9 8 6 34 34 H 0.97005 * 120.00432 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4865 2.2074 -1.2040 5 7 1.6802 2.1228 1.2561 6 6 2.8362 2.4662 1.8524 7 8 2.9003 3.0453 2.9191 8 7 3.9075 2.1022 1.1383 9 6 5.2922 2.3519 1.5463 10 6 5.7433 3.6837 1.0041 11 8 4.9851 4.3552 0.3382 12 8 6.9871 4.1242 1.2545 13 6 7.3270 5.3244 0.7403 14 1 6.6110 5.8842 0.1568 15 6 8.5966 5.8390 0.9602 16 7 9.4682 5.1575 1.6699 17 14 9.0674 7.5004 0.2477 18 1 8.1589 8.5449 0.7851 19 1 10.4675 7.8216 0.6239 20 1 8.9498 7.4557 -1.2320 21 6 3.5555 1.4724 0.0000 22 8 4.2968 1.0238 -0.8479 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8387 1.7410 -2.1240 29 1 0.3970 2.1849 -1.1791 30 1 1.8295 3.2414 -1.1665 31 1 0.7847 2.2874 1.5902 32 1 5.9344 1.5634 1.1539 33 1 5.3540 2.3630 2.6345 34 1 10.3557 5.5174 1.8239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057531272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -120.433590 kcal Electronic energy + Delta-G solvation = -21264.813946 eV Core-core repulsion = 17778.484295 eV Total energy + Delta-G solvation = -3486.329651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50549 -38.98101 -38.50023 -36.97028 -35.66181 -34.78661 -32.69115 -32.15814 -29.60823 -28.79333 -25.78705 -25.08255 -23.36517 -21.83989 -20.60595 -19.77378 -17.89265 -17.78013 -17.24276 -16.38407 -16.00857 -15.63859 -15.44756 -15.07797 -14.71887 -14.54882 -14.26829 -14.04724 -14.00301 -13.27841 -12.82958 -12.45364 -12.36650 -12.22330 -12.20571 -11.68923 -11.63375 -11.26384 -11.12703 -10.71984 -10.46322 -10.40803 -10.07646 -10.01673 -9.82523 -9.52045 -8.97085 -8.58598 -6.41874 -4.09968 1.72700 2.20002 3.05152 3.11749 3.15233 3.20226 3.24679 3.45423 3.85457 3.97996 4.26700 4.48143 4.54777 4.88049 4.97092 5.05444 5.19804 5.21426 5.36289 5.47697 5.50434 5.58871 5.61754 5.64714 5.78576 5.84816 5.97776 6.61191 6.78115 7.14612 7.37375 7.46790 7.92691 8.21831 8.64581 9.06040 9.77882 10.75628 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036589 B = 0.004601 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.068935 B = 6084.652416 C = 6195.657675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.124 3.876 4 C -0.150 4.150 5 N -0.721 5.721 6 C 0.710 3.290 7 O -0.538 6.538 8 N -0.557 5.557 9 C 0.135 3.865 10 C 0.384 3.616 11 O -0.549 6.549 12 O -0.207 6.207 13 C -0.382 4.382 14 H 0.095 0.905 15 C 0.044 3.956 16 N -0.863 5.863 17 Si 0.946 3.054 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C 0.535 3.465 22 O -0.461 6.461 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.436 0.564 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.350 -10.827 -2.813 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.033 3.967 4 C -0.208 4.208 5 N -0.386 5.386 6 C 0.411 3.589 7 O -0.411 6.411 8 N -0.303 5.303 9 C 0.012 3.988 10 C 0.229 3.771 11 O -0.446 6.446 12 O -0.113 6.113 13 C -0.458 4.458 14 H 0.113 0.887 15 C -0.161 4.161 16 N -0.500 5.500 17 Si 0.770 3.230 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C 0.321 3.679 22 O -0.330 6.330 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.281 0.719 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.708 -10.538 -2.771 19.117 hybrid contribution -0.059 0.973 -0.147 0.986 sum -15.767 -9.564 -2.918 18.670 Atomic orbital electron populations 1.21807 0.94192 1.02551 1.02368 1.21738 0.97409 0.92240 1.04215 1.21458 0.92112 0.95702 0.87412 1.22052 1.02012 1.01196 0.95531 1.45560 1.07780 1.62742 1.22512 1.15764 0.80993 0.78697 0.83488 1.91017 1.85339 1.43891 1.20824 1.45883 1.08077 1.53958 1.22361 1.20835 0.78806 0.96060 1.03062 1.23120 0.83070 0.88515 0.82422 1.90562 1.55331 1.58255 1.40435 1.83842 1.27157 1.35974 1.64355 1.21177 0.98755 0.92883 1.32976 0.88703 1.25343 0.94508 0.99767 0.96460 1.69982 1.05750 1.37902 1.36335 0.85711 0.77753 0.80183 0.79330 1.19445 1.20282 1.19446 1.20723 0.90483 0.76192 0.80481 1.90786 1.59163 1.44882 1.38158 0.92462 0.91696 0.91791 0.89219 0.90699 0.89875 0.90163 0.90767 0.71944 0.85712 0.85516 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.41 37.16 0.35 -0.49 16 2 C -0.12 -0.93 5.30 -26.73 -0.14 -1.08 16 3 C 0.12 1.38 1.01 -132.09 -0.13 1.25 16 4 C -0.15 -1.47 8.61 37.16 0.32 -1.15 16 5 N -0.72 -8.45 5.62 -52.93 -0.30 -8.75 16 6 C 0.71 11.98 8.62 -88.01 -0.76 11.22 16 7 O -0.54 -10.91 17.48 5.33 0.09 -10.82 16 8 N -0.56 -9.83 2.09 -122.01 -0.26 -10.08 16 9 C 0.14 2.61 6.29 -5.19 -0.03 2.57 16 10 C 0.38 9.86 7.97 36.01 0.29 10.15 16 11 O -0.55 -15.32 15.67 -19.05 -0.30 -15.62 16 12 O -0.21 -6.07 9.75 -20.69 -0.20 -6.27 16 13 C -0.38 -11.57 9.64 30.92 0.30 -11.28 16 14 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 15 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 16 N -0.86 -25.55 13.67 55.48 0.76 -24.80 16 17 Si 0.95 21.71 29.55 -169.99 -5.02 16.69 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C 0.53 8.54 6.98 -10.55 -0.07 8.47 16 22 O -0.46 -8.40 17.76 5.60 0.10 -8.30 16 23 H 0.06 0.29 7.41 -51.93 -0.38 -0.09 16 24 H 0.06 0.31 6.42 -51.93 -0.33 -0.02 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.54 6.37 -51.93 -0.33 0.21 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.44 3.79 8.41 -40.82 -0.34 3.44 16 32 H 0.13 2.11 8.00 -51.93 -0.42 1.70 16 33 H 0.13 2.23 7.85 -51.93 -0.41 1.82 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -37.38 302.59 -4.37 -41.75 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.82 Total: 0.80 kcal Atomic # 6 Polarization: 20.81 SS G_CDS: 0.02 Total: 20.83 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.21 Total: -43.63 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.31 Total: -41.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -37.38 -4.37 -41.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057531272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.683 kcal (2) G-P(sol) polarization free energy of solvation -37.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds