Wall clock time and date at job start Mon Mar 30 2020 01:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46730 * 2 1 4 4 C 1.53002 * 110.53634 * 302.82623 * 3 2 1 5 5 N 1.47307 * 110.73482 * 65.74968 * 3 2 1 6 6 C 1.34527 * 106.62199 * 118.36426 * 5 3 2 7 7 O 1.21539 * 123.77639 * 180.21073 * 6 5 3 8 8 N 1.33797 * 112.45590 * 0.38458 * 6 5 3 9 9 C 1.46500 * 124.17856 * 179.86015 * 8 6 5 10 10 C 1.50706 * 109.46949 * 269.70353 * 9 8 6 11 11 O 1.21207 * 120.00189 * 359.72242 * 10 9 8 12 12 O 1.34310 * 119.99701 * 179.97438 * 10 9 8 13 13 C 1.34915 * 117.00237 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99912 * 359.97438 * 13 12 10 15 15 C 1.38749 * 120.00590 * 180.02562 * 13 12 10 16 16 N 1.31442 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00435 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47272 * 59.99803 * 17 15 13 19 19 H 1.48494 * 109.47303 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47008 * 299.99841 * 17 15 13 21 21 C 1.34767 * 111.64414 * 359.59881 * 8 6 5 22 22 O 1.21229 * 127.15792 * 180.19347 * 21 8 6 23 23 H 1.08999 * 109.46865 * 299.99837 * 1 2 3 24 24 H 1.08994 * 109.47180 * 60.00415 * 1 2 3 25 25 H 1.09005 * 109.46740 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47360 * 239.99975 * 2 1 3 27 27 H 1.09001 * 109.47543 * 119.99531 * 2 1 3 28 28 H 1.08994 * 109.47266 * 297.87296 * 4 3 2 29 29 H 1.08998 * 109.46699 * 57.87577 * 4 3 2 30 30 H 1.09005 * 109.47068 * 177.87048 * 4 3 2 31 31 H 0.96995 * 126.69358 * 298.62846 * 5 3 2 32 32 H 1.09000 * 109.47175 * 149.70379 * 9 8 6 33 33 H 1.09001 * 109.47297 * 29.69886 * 9 8 6 34 34 H 0.97005 * 120.00432 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4865 2.2074 -1.2040 5 7 1.6802 2.1228 1.2561 6 6 2.8362 2.4662 1.8524 7 8 2.9003 3.0453 2.9191 8 7 3.9075 2.1022 1.1383 9 6 5.2922 2.3519 1.5463 10 6 5.7433 3.6837 1.0041 11 8 4.9851 4.3552 0.3382 12 8 6.9871 4.1242 1.2545 13 6 7.3270 5.3244 0.7403 14 1 6.6110 5.8842 0.1568 15 6 8.5966 5.8390 0.9602 16 7 9.4682 5.1575 1.6699 17 14 9.0674 7.5004 0.2477 18 1 8.1589 8.5449 0.7851 19 1 10.4675 7.8216 0.6239 20 1 8.9498 7.4557 -1.2320 21 6 3.5555 1.4724 0.0000 22 8 4.2968 1.0238 -0.8479 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8387 1.7410 -2.1240 29 1 0.3970 2.1849 -1.1791 30 1 1.8295 3.2414 -1.1665 31 1 0.7847 2.2874 1.5902 32 1 5.9344 1.5634 1.1539 33 1 5.3540 2.3630 2.6345 34 1 10.3557 5.5174 1.8239 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057531272.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:41 Heat of formation + Delta-G solvation = -148.385967 kcal Electronic energy + Delta-G solvation = -21266.026052 eV Core-core repulsion = 17778.484295 eV Total energy + Delta-G solvation = -3487.541757 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.76630 -41.06394 -39.85818 -38.15806 -37.51003 -36.43545 -34.39110 -33.65425 -30.53736 -30.23137 -27.48010 -26.44380 -24.49234 -23.39574 -21.63928 -21.37316 -20.01418 -19.13454 -19.04409 -17.66304 -17.60105 -16.96514 -16.77274 -16.73921 -16.43509 -16.12244 -15.86535 -15.36939 -14.98785 -14.42713 -14.12157 -13.93257 -13.69107 -13.64692 -13.10331 -13.04927 -12.98586 -12.43450 -12.37483 -12.20880 -12.13716 -12.01291 -11.81956 -11.72590 -11.23764 -10.93313 -10.75761 -10.55370 -8.59874 -6.41042 0.45595 0.87071 1.20301 1.31674 1.47788 1.53732 1.74086 2.03989 2.12307 2.64974 2.78414 2.90888 3.42025 3.65986 3.80724 3.99797 4.13145 4.30375 4.36430 4.44713 4.57429 4.59140 4.73282 4.83744 5.01954 5.07747 5.12046 5.21571 5.46114 5.71563 5.74787 5.89069 6.21309 6.49788 6.83464 6.98180 7.59914 8.60077 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036589 B = 0.004601 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.068935 B = 6084.652416 C = 6195.657675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.134 3.866 4 C -0.148 4.148 5 N -0.693 5.693 6 C 0.703 3.297 7 O -0.579 6.579 8 N -0.567 5.567 9 C 0.143 3.857 10 C 0.380 3.620 11 O -0.576 6.576 12 O -0.234 6.234 13 C -0.426 4.426 14 H 0.080 0.920 15 C 0.000 4.000 16 N -0.897 5.897 17 Si 1.019 2.981 18 H -0.262 1.262 19 H -0.255 1.255 20 H -0.261 1.261 21 C 0.523 3.477 22 O -0.489 6.489 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.044 0.956 31 H 0.453 0.547 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.913 -11.253 -3.541 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.044 3.956 4 C -0.206 4.206 5 N -0.359 5.359 6 C 0.404 3.596 7 O -0.455 6.455 8 N -0.313 5.313 9 C 0.019 3.981 10 C 0.227 3.773 11 O -0.474 6.474 12 O -0.141 6.141 13 C -0.501 4.501 14 H 0.098 0.902 15 C -0.202 4.202 16 N -0.534 5.534 17 Si 0.838 3.162 18 H -0.187 1.187 19 H -0.179 1.179 20 H -0.185 1.185 21 C 0.312 3.688 22 O -0.359 6.359 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.301 0.699 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.336 -11.009 -3.513 20.835 hybrid contribution 0.366 1.020 0.060 1.085 sum -16.970 -9.989 -3.453 19.992 Atomic orbital electron populations 1.21833 0.91691 1.03820 1.03291 1.21791 0.99362 0.89219 1.04598 1.21682 0.88393 0.98181 0.87382 1.22123 1.04449 0.99088 0.94906 1.45464 1.07143 1.61261 1.21998 1.15968 0.81943 0.78559 0.83155 1.90986 1.85993 1.45906 1.22610 1.46076 1.07566 1.54274 1.23347 1.20875 0.80524 0.92817 1.03849 1.24384 0.81771 0.90068 0.81126 1.90519 1.55685 1.59674 1.41523 1.83860 1.29012 1.36026 1.65193 1.21390 0.99782 0.93985 1.34961 0.90211 1.26575 0.93523 1.03952 0.96101 1.70057 1.06449 1.39983 1.36901 0.84673 0.78411 0.74402 0.78760 1.18701 1.17901 1.18545 1.21667 0.92740 0.75056 0.79364 1.90762 1.60500 1.45943 1.38741 0.91810 0.90488 0.90457 0.88577 0.90759 0.89138 0.86150 0.93636 0.69872 0.83383 0.83845 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.41 71.98 0.68 -0.35 16 2 C -0.11 -1.44 5.30 30.59 0.16 -1.28 16 3 C 0.13 2.73 1.01 2.99 0.00 2.73 16 4 C -0.15 -2.57 8.61 71.98 0.62 -1.95 16 5 N -0.69 -15.07 5.62 -439.81 -2.47 -17.54 16 6 C 0.70 23.55 8.62 179.44 1.55 25.10 16 7 O -0.58 -23.71 17.48 -3.84 -0.07 -23.78 16 8 N -0.57 -20.07 2.09 -777.19 -1.63 -21.69 16 9 C 0.14 5.61 6.29 85.63 0.54 6.15 16 10 C 0.38 20.25 7.97 71.24 0.57 20.82 16 11 O -0.58 -33.38 15.67 20.78 0.33 -33.05 16 12 O -0.23 -14.26 9.75 14.93 0.15 -14.11 16 13 C -0.43 -26.72 9.64 67.94 0.66 -26.07 16 14 H 0.08 5.10 6.86 -2.91 -0.02 5.08 16 15 C 0.00 -0.03 5.49 84.87 0.47 0.44 16 16 N -0.90 -53.73 13.67 21.62 0.30 -53.43 16 17 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 C 0.52 16.49 6.98 87.94 0.61 17.10 16 22 O -0.49 -17.81 17.76 -2.87 -0.05 -17.86 16 23 H 0.06 0.38 7.41 -2.39 -0.02 0.36 16 24 H 0.08 0.37 6.42 -2.39 -0.02 0.36 16 25 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.12 1.13 6.37 -2.39 -0.02 1.12 16 30 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.45 6.70 8.41 -92.71 -0.78 5.93 16 32 H 0.15 5.07 8.00 -2.39 -0.02 5.05 16 33 H 0.14 5.13 7.85 -2.39 -0.02 5.12 16 34 H 0.28 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -84.64 302.59 4.80 -79.84 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.37 Total: 12.55 kcal Atomic # 6 Polarization: 36.84 SS G_CDS: 5.85 Total: 42.70 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -3.80 Total: -92.67 kcal Atomic # 8 Polarization: -89.16 SS G_CDS: 0.35 Total: -88.80 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -84.64 4.80 -79.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057531272.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.547 kcal (2) G-P(sol) polarization free energy of solvation -84.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds