Wall clock time and date at job start Mon Mar 30 2020 00:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00393 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99616 * 3 2 1 5 5 H 1.48493 * 109.47380 * 29.99699 * 3 2 1 6 6 H 1.48501 * 109.47178 * 149.99651 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47313 * 180.02562 * 9 7 2 11 11 O 1.45192 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99928 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99911 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99855 * 180.02562 * 12 11 10 15 15 F 1.39897 * 109.47206 * 84.99990 * 14 12 11 16 16 F 1.39902 * 109.47243 * 324.99443 * 14 12 11 17 17 C 1.50707 * 109.46755 * 204.99887 * 14 12 11 18 18 C 1.38238 * 119.99792 * 269.99985 * 17 14 12 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 14 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 89.97921 * 17 14 12 23 23 H 0.97009 * 119.99463 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47093 * 60.00652 * 9 7 2 25 25 H 1.09001 * 109.47460 * 300.00342 * 9 7 2 26 26 H 1.09000 * 109.46612 * 60.00232 * 10 9 7 27 27 H 1.09001 * 109.47034 * 300.00477 * 10 9 7 28 28 H 1.08005 * 120.00068 * 359.97438 * 18 17 14 29 29 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 31 31 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 32 32 H 1.07999 * 119.99968 * 359.97438 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 8 5.4733 -2.6368 0.0001 12 6 6.0827 -3.8328 -0.0003 13 8 5.4245 -4.8461 -0.0002 14 6 7.5876 -3.9117 0.0003 15 9 8.0588 -3.8221 1.3145 16 9 8.1103 -2.8568 -0.7555 17 6 8.0220 -5.2237 -0.6007 18 6 8.1943 -6.3313 0.2084 19 6 8.5922 -7.5348 -0.3430 20 6 8.8173 -7.6310 -1.7035 21 6 8.6503 -6.5221 -2.5118 22 6 8.2478 -5.3197 -1.9611 23 1 -0.4850 0.8402 -0.0004 24 1 3.8751 -0.6799 0.8895 25 1 3.8745 -0.6809 -0.8905 26 1 3.6577 -3.1507 -0.8897 27 1 3.6583 -3.1504 0.8903 28 1 8.0180 -6.2562 1.2713 29 1 8.7272 -8.4000 0.2891 30 1 9.1279 -8.5714 -2.1343 31 1 8.8304 -6.5961 -3.5741 32 1 8.1125 -4.4546 -2.5933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058966021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:54 Heat of formation + Delta-G solvation = -155.067493 kcal Electronic energy + Delta-G solvation = -20053.920533 eV Core-core repulsion = 16422.708777 eV Total energy + Delta-G solvation = -3631.211756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.45129 -47.46635 -40.37426 -39.34076 -36.62651 -33.39875 -32.45175 -31.27573 -30.90549 -27.85831 -25.27087 -22.97502 -22.89858 -21.03294 -20.76424 -18.71445 -18.21108 -17.88066 -17.17811 -16.51513 -16.11166 -15.96324 -15.04919 -14.95001 -14.46078 -14.22216 -14.17356 -13.92687 -13.57251 -13.50409 -13.28312 -12.93239 -12.74475 -12.45630 -11.70264 -11.60794 -11.46806 -11.39010 -10.84538 -10.79128 -10.16474 -10.01029 -9.83748 -9.41727 -9.36145 -9.27169 -8.66354 -6.17032 -4.19102 0.74866 1.05453 1.80537 2.22075 3.24292 3.26335 3.33898 3.38647 3.50568 3.80570 4.19272 4.35626 4.59797 4.64207 4.71161 4.77047 5.08783 5.16516 5.21792 5.44896 5.66474 5.73048 5.82110 6.02397 6.03609 6.13015 6.30748 6.40420 6.55193 7.01839 7.13331 7.51260 7.64051 8.33986 8.83498 9.42059 10.95266 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.003987 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.814390 B = 7021.951204 C = 7226.110989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.076 0.924 9 C -0.010 4.010 10 C 0.079 3.921 11 O -0.340 6.340 12 C 0.429 3.571 13 O -0.463 6.463 14 C 0.367 3.633 15 F -0.169 7.169 16 F -0.169 7.169 17 C -0.150 4.150 18 C -0.067 4.067 19 C -0.122 4.122 20 C -0.096 4.096 21 C -0.122 4.122 22 C -0.078 4.078 23 H 0.267 0.733 24 H 0.031 0.969 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.123 -12.864 -2.543 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.568 4.568 8 H 0.094 0.906 9 C -0.047 4.047 10 C 0.007 3.993 11 O -0.255 6.255 12 C 0.266 3.734 13 O -0.349 6.349 14 C 0.329 3.671 15 F -0.149 7.149 16 F -0.149 7.149 17 C -0.151 4.151 18 C -0.085 4.085 19 C -0.140 4.140 20 C -0.114 4.114 21 C -0.140 4.140 22 C -0.096 4.096 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 19.716 -12.984 -2.520 23.742 hybrid contribution 0.232 0.996 0.100 1.028 sum 19.948 -11.988 -2.421 23.398 Atomic orbital electron populations 1.69891 1.06287 1.27308 1.49809 1.24921 0.94774 0.99203 0.93987 0.86756 0.80469 0.83213 0.78845 1.19961 1.21078 1.18688 1.20795 0.88010 0.95131 1.52825 0.90573 1.19662 0.97130 0.89684 0.98238 1.23645 0.70890 1.02398 1.02336 1.86577 1.27331 1.30257 1.81341 1.23503 0.90447 0.83858 0.75559 1.90726 1.65197 1.36358 1.42639 1.18930 0.86799 0.85449 0.75891 1.93104 1.89051 1.96659 1.36121 1.93112 1.87669 1.58721 1.75438 1.19752 1.06650 0.93020 0.95632 1.20938 0.95679 0.91684 1.00208 1.21143 1.00046 0.97344 0.95450 1.21356 0.97539 0.98693 0.93833 1.21135 1.00132 0.92335 1.00358 1.20990 0.96473 0.98984 0.93201 0.92344 0.95114 0.95537 0.91057 0.91041 0.84919 0.85040 0.85320 0.85012 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.23 4.42 -27.88 -0.12 -0.36 16 10 C 0.08 1.67 5.40 37.16 0.20 1.88 16 11 O -0.34 -6.62 10.05 -39.26 -0.39 -7.01 16 12 C 0.43 7.50 7.33 36.01 0.26 7.76 16 13 O -0.46 -8.71 15.98 -18.75 -0.30 -9.01 16 14 C 0.37 5.38 2.26 -29.03 -0.07 5.31 16 15 F -0.17 -2.41 16.19 2.25 0.04 -2.38 16 16 F -0.17 -2.46 16.06 2.25 0.04 -2.43 16 17 C -0.15 -1.90 4.39 -104.62 -0.46 -2.36 16 18 C -0.07 -0.75 9.36 -39.58 -0.37 -1.12 16 19 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 20 C -0.10 -0.78 10.05 -39.58 -0.40 -1.18 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.08 -0.87 9.40 -39.58 -0.37 -1.24 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 25 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 26 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 27 H 0.07 1.49 8.13 -51.93 -0.42 1.07 16 28 H 0.13 1.37 7.60 -52.48 -0.40 0.97 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 30 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 1.35 7.61 -52.49 -0.40 0.95 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -31.19 295.02 -5.88 -37.07 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -3.26 Total: -3.52 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.55 Total: -7.50 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.69 Total: -16.02 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.07 Total: -4.80 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.19 -5.88 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058966021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.997 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds