Wall clock time and date at job start Mon Mar 30 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00393 * 2 1 4 4 H 1.48497 * 109.47089 * 269.99616 * 3 2 1 5 5 H 1.48493 * 109.47380 * 29.99699 * 3 2 1 6 6 H 1.48501 * 109.47178 * 149.99651 * 3 2 1 7 7 C 1.37879 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00022 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00027 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47313 * 180.02562 * 9 7 2 11 11 O 1.45192 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99928 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99911 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.99855 * 180.02562 * 12 11 10 15 15 F 1.39897 * 109.47206 * 84.99990 * 14 12 11 16 16 F 1.39902 * 109.47243 * 324.99443 * 14 12 11 17 17 C 1.50707 * 109.46755 * 204.99887 * 14 12 11 18 18 C 1.38238 * 119.99792 * 269.99985 * 17 14 12 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 14 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00179 * 89.97921 * 17 14 12 23 23 H 0.97009 * 119.99463 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47093 * 60.00652 * 9 7 2 25 25 H 1.09001 * 109.47460 * 300.00342 * 9 7 2 26 26 H 1.09000 * 109.46612 * 60.00232 * 10 9 7 27 27 H 1.09001 * 109.47034 * 300.00477 * 10 9 7 28 28 H 1.08005 * 120.00068 * 359.97438 * 18 17 14 29 29 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 30 30 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 31 31 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 32 32 H 1.07999 * 119.99968 * 359.97438 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 8 5.4733 -2.6368 0.0001 12 6 6.0827 -3.8328 -0.0003 13 8 5.4245 -4.8461 -0.0002 14 6 7.5876 -3.9117 0.0003 15 9 8.0588 -3.8221 1.3145 16 9 8.1103 -2.8568 -0.7555 17 6 8.0220 -5.2237 -0.6007 18 6 8.1943 -6.3313 0.2084 19 6 8.5922 -7.5348 -0.3430 20 6 8.8173 -7.6310 -1.7035 21 6 8.6503 -6.5221 -2.5118 22 6 8.2478 -5.3197 -1.9611 23 1 -0.4850 0.8402 -0.0004 24 1 3.8751 -0.6799 0.8895 25 1 3.8745 -0.6809 -0.8905 26 1 3.6577 -3.1507 -0.8897 27 1 3.6583 -3.1504 0.8903 28 1 8.0180 -6.2562 1.2713 29 1 8.7272 -8.4000 0.2891 30 1 9.1279 -8.5714 -2.1343 31 1 8.8304 -6.5961 -3.5741 32 1 8.1125 -4.4546 -2.5933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058966021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:53 Heat of formation + Delta-G solvation = -172.096764 kcal Electronic energy + Delta-G solvation = -20054.658977 eV Core-core repulsion = 16422.708777 eV Total energy + Delta-G solvation = -3631.950201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.60573 -48.62119 -41.81559 -40.13996 -38.14995 -35.47098 -33.36407 -32.85676 -31.98849 -29.07874 -27.06512 -24.08427 -23.70180 -22.70498 -22.11251 -20.10193 -19.23041 -19.11260 -18.98705 -18.01566 -17.54309 -16.95439 -16.38127 -15.90050 -15.81689 -15.70209 -15.33624 -15.14186 -14.97435 -14.80205 -14.35312 -14.32193 -13.81384 -13.68437 -13.46022 -13.24903 -12.64780 -12.59883 -12.41700 -12.14993 -11.86640 -11.74598 -11.62735 -11.55519 -10.83855 -10.12732 -9.99698 -8.36993 -6.45550 -0.06674 0.33231 0.40544 0.92041 1.37072 1.38650 1.51098 2.27535 2.32222 2.51952 2.69253 2.97928 3.13008 3.29551 3.93327 3.95532 4.01344 4.06133 4.18022 4.43402 4.48604 4.50697 4.72434 4.78840 4.98565 5.18294 5.21173 5.26933 5.35417 5.44807 5.45727 5.88199 6.07761 6.12544 6.60250 7.19718 8.78750 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.035533 B = 0.003987 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.814390 B = 7021.951204 C = 7226.110989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.543 4.543 8 H 0.040 0.960 9 C -0.006 4.006 10 C 0.089 3.911 11 O -0.345 6.345 12 C 0.428 3.572 13 O -0.477 6.477 14 C 0.376 3.624 15 F -0.168 7.168 16 F -0.169 7.169 17 C -0.175 4.175 18 C -0.085 4.085 19 C -0.122 4.122 20 C -0.090 4.090 21 C -0.122 4.122 22 C -0.096 4.096 23 H 0.271 0.729 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.492 -13.407 -3.212 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.183 4.183 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.581 4.581 8 H 0.058 0.942 9 C -0.043 4.043 10 C 0.016 3.984 11 O -0.261 6.261 12 C 0.266 3.734 13 O -0.364 6.364 14 C 0.338 3.662 15 F -0.148 7.148 16 F -0.150 7.150 17 C -0.176 4.176 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.108 4.108 21 C -0.139 4.139 22 C -0.114 4.114 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.177 0.823 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 22.106 -13.547 -3.189 26.123 hybrid contribution -0.507 1.012 0.292 1.169 sum 21.599 -12.536 -2.897 25.141 Atomic orbital electron populations 1.70028 1.08228 1.28675 1.51130 1.25895 0.95640 1.03416 0.93376 0.85653 0.79495 0.77949 0.79611 1.18691 1.20470 1.17039 1.21054 0.90327 0.93990 1.52680 0.94210 1.19505 0.94458 0.91628 0.98708 1.23260 0.72286 1.00622 1.02214 1.86550 1.26044 1.31658 1.81866 1.24165 0.91783 0.82893 0.74572 1.90708 1.65928 1.36616 1.43099 1.18889 0.84501 0.86707 0.76131 1.93102 1.88738 1.96752 1.36248 1.93106 1.87384 1.59039 1.75451 1.19767 1.08994 0.92227 0.96600 1.21133 0.96552 0.92318 1.00344 1.21524 0.98860 0.97205 0.96419 1.21824 0.95720 0.99789 0.93430 1.21520 0.98921 0.91586 1.01922 1.21197 0.97242 1.00280 0.92664 0.91958 0.94609 0.94575 0.91176 0.91344 0.84964 0.82349 0.81870 0.82302 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.96 21.45 0.30 -57.78 16 2 C 0.02 0.88 5.47 84.66 0.46 1.34 16 3 Si 0.95 43.41 27.47 68.60 1.88 45.30 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.54 -31.14 9.66 25.60 0.25 -30.89 16 8 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 9 C -0.01 -0.26 4.42 29.85 0.13 -0.13 16 10 C 0.09 3.77 5.40 71.98 0.39 4.16 16 11 O -0.35 -13.34 10.05 -51.42 -0.52 -13.85 16 12 C 0.43 14.90 7.33 71.24 0.52 15.42 16 13 O -0.48 -17.99 15.98 21.96 0.35 -17.64 16 14 C 0.38 10.86 2.26 29.11 0.07 10.92 16 15 F -0.17 -4.74 16.19 44.97 0.73 -4.01 16 16 F -0.17 -4.85 16.06 44.97 0.72 -4.12 16 17 C -0.18 -4.32 4.39 -19.86 -0.09 -4.40 16 18 C -0.09 -1.81 9.36 22.27 0.21 -1.60 16 19 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 20 C -0.09 -1.15 10.05 22.27 0.22 -0.92 16 21 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 22 C -0.10 -2.00 9.40 22.27 0.21 -1.79 16 23 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 24 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 25 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 26 H 0.07 2.96 8.13 -2.39 -0.02 2.94 16 27 H 0.07 2.91 8.13 -2.39 -0.02 2.89 16 28 H 0.13 2.66 7.60 -2.91 -0.02 2.64 16 29 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 30 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.14 2.64 7.61 -2.91 -0.02 2.61 16 Total: -1.00 -67.66 295.02 7.37 -60.29 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.08 Total: 2.96 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 2.82 Total: -11.13 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.30 Total: -57.78 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.17 Total: -31.50 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 1.45 Total: -8.13 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -67.66 7.37 -60.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058966021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.810 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds