Wall clock time and date at job start Mon Mar 30 2020 00:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 120.00036 * 2 1 4 4 H 1.48500 * 109.46945 * 269.99948 * 3 2 1 5 5 H 1.48506 * 109.47163 * 29.99514 * 3 2 1 6 6 H 1.48494 * 109.47468 * 149.99467 * 3 2 1 7 7 C 1.38796 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99996 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00125 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47079 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00024 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00036 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99942 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47036 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47216 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47202 * 180.02562 * 16 15 14 18 18 N 1.30829 * 125.96102 * 304.97821 * 17 16 15 19 19 C 1.33239 * 109.82920 * 179.97438 * 18 17 16 20 20 N 1.30714 * 108.94945 * 359.97438 * 19 18 17 21 21 N 1.34428 * 125.96139 * 124.94746 * 17 16 15 22 22 H 0.97003 * 126.82574 * 0.02562 * 21 17 16 23 23 H 0.97005 * 120.00260 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47283 * 59.99838 * 10 9 7 25 25 H 1.09002 * 109.46904 * 300.00026 * 10 9 7 26 26 H 0.96998 * 119.99695 * 359.97438 * 13 11 10 27 27 H 1.09006 * 109.47115 * 60.00124 * 14 13 11 28 28 H 1.08993 * 109.47193 * 299.99903 * 14 13 11 29 29 H 1.09002 * 109.46859 * 59.99750 * 15 14 13 30 30 H 1.09002 * 109.47122 * 300.00203 * 15 14 13 31 31 H 1.08993 * 109.47163 * 60.00051 * 16 15 14 32 32 H 1.09002 * 109.47221 * 300.00118 * 16 15 14 33 33 H 1.08002 * 125.53210 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0003 14 6 2.3304 -7.7150 0.0003 15 6 3.5025 -8.6985 0.0001 16 6 2.9660 -10.1313 -0.0006 17 6 4.1204 -11.1000 0.0000 18 7 5.0997 -11.1286 -0.8671 19 6 5.9439 -12.1136 -0.5631 20 7 5.5118 -12.7280 0.5067 21 7 4.3239 -12.0851 0.8917 22 1 3.7622 -12.3076 1.6506 23 1 -0.4851 0.8401 -0.0004 24 1 3.1245 -3.7314 0.8904 25 1 3.1245 -3.7313 -0.8895 26 1 3.8009 -6.1834 0.0006 27 1 1.7221 -7.8752 -0.8900 28 1 1.7215 -7.8750 0.8900 29 1 4.1111 -8.5384 0.8901 30 1 4.1111 -8.5384 -0.8899 31 1 2.3576 -10.2911 -0.8907 32 1 2.3571 -10.2918 0.8892 33 1 6.8399 -12.3640 -1.1117 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070819349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:42 Heat of formation + Delta-G solvation = 7.109076 kcal Electronic energy + Delta-G solvation = -16838.896285 eV Core-core repulsion = 13833.142922 eV Total energy + Delta-G solvation = -3005.753363 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.10152 -40.55493 -36.99404 -34.61973 -34.54920 -33.49560 -31.96835 -30.49149 -27.73723 -27.07218 -23.66285 -23.16293 -21.91330 -21.29300 -19.79194 -18.95412 -17.72744 -17.22234 -16.93025 -16.86382 -16.48114 -15.93745 -15.81785 -15.56363 -14.84630 -14.61108 -14.29622 -13.94737 -13.64548 -13.29646 -13.14939 -12.88664 -12.83672 -12.59257 -12.41480 -11.85514 -11.71159 -11.22760 -11.13002 -11.08458 -10.95185 -10.57659 -10.25777 -10.05557 -8.64741 -8.33397 -6.11089 0.59335 1.29031 1.43597 1.48634 1.58750 1.65682 1.71961 1.92344 2.28190 2.37444 3.00703 3.16204 3.34309 3.71072 3.86526 4.00295 4.07713 4.24355 4.33118 4.34147 4.54916 4.61278 4.67647 4.83344 5.14875 5.20432 5.27909 5.43335 5.45606 5.51538 6.15091 6.21243 6.54841 7.08051 7.08480 7.28836 8.75752 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.056351 B = 0.002505 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.770492 B =11174.196176 C =11536.209242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.714 5.714 14 C 0.120 3.880 15 C -0.107 4.107 16 C -0.036 4.036 17 C 0.292 3.708 18 N -0.569 5.569 19 C 0.198 3.802 20 N -0.349 5.349 21 N -0.476 5.476 22 H 0.454 0.546 23 H 0.271 0.729 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.416 0.584 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.677 -22.524 1.293 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.368 5.368 14 C -0.004 4.004 15 C -0.146 4.146 16 C -0.076 4.076 17 C 0.014 3.986 18 N -0.299 5.299 19 C -0.105 4.105 20 N -0.178 5.178 21 N -0.195 5.195 22 H 0.302 0.698 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.127 0.873 26 H 0.253 0.747 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 10.006 -23.207 1.320 25.307 hybrid contribution 1.537 1.163 0.413 1.971 sum 11.543 -22.045 1.733 24.944 Atomic orbital electron populations 1.70183 1.07944 1.28584 1.48053 1.26129 0.95981 1.03327 0.93798 0.84953 0.78191 0.76051 0.78778 1.19336 1.20332 1.18221 1.23207 0.95342 0.92048 1.58767 0.89938 1.85549 1.10678 0.99245 1.97048 1.23386 1.03490 0.94572 1.06782 1.20012 0.86248 0.86665 0.75195 1.90691 1.17355 1.86116 1.50252 1.45748 1.10315 1.05355 1.75420 1.21403 0.96845 0.79595 1.02517 1.21524 0.96948 0.91705 1.04397 1.20224 0.90948 0.89418 1.07045 1.24713 0.96697 0.90805 0.86422 1.70497 1.05755 1.24381 1.29243 1.26632 1.00511 0.90356 0.92977 1.77988 0.98932 1.22460 1.18401 1.48060 1.20270 1.25214 1.25976 0.69817 0.92010 0.87239 0.87278 0.74742 0.91741 0.91367 0.90322 0.90011 0.86793 0.86354 0.74180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.80 13.22 21.65 0.29 -55.51 16 2 C 0.01 0.70 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.55 -31.00 9.50 67.95 0.65 -30.36 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.13 -5.06 6.16 71.24 0.44 -4.63 16 11 C 0.53 18.80 7.85 87.66 0.69 19.49 16 12 O -0.57 -25.27 15.86 -3.04 -0.05 -25.31 16 13 N -0.71 -16.24 5.56 -463.06 -2.57 -18.82 16 14 C 0.12 2.10 5.67 86.38 0.49 2.59 16 15 C -0.11 -1.17 5.29 30.59 0.16 -1.01 16 16 C -0.04 -0.29 5.84 29.85 0.17 -0.11 16 17 C 0.29 3.86 7.51 138.23 1.04 4.90 16 18 N -0.57 -10.11 11.16 -191.78 -2.14 -12.25 16 19 C 0.20 3.15 13.03 180.77 2.36 5.51 16 20 N -0.35 -6.04 12.80 -61.24 -0.78 -6.82 16 21 N -0.48 -5.85 7.45 -50.71 -0.38 -6.22 16 22 H 0.45 2.56 8.96 -213.09 -1.91 0.65 16 23 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 24 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 25 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 26 H 0.42 6.82 8.47 -92.71 -0.79 6.03 16 27 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.24 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -82.45 310.57 0.14 -82.31 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -1.55 Total: 9.20 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 6.46 Total: -2.45 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -5.59 Total: -99.62 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -82.45 0.14 -82.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070819349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.415 kcal (2) G-P(sol) polarization free energy of solvation -82.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds