Wall clock time and date at job start Mon Mar 30 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47208 * 270.00125 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99785 * 3 2 1 6 6 H 1.48502 * 109.47015 * 150.00049 * 3 2 1 7 7 C 1.37878 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00069 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00078 * 180.02562 * 7 2 1 10 10 S 1.80997 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.76199 * 100.00003 * 179.97438 * 10 9 7 12 12 N 1.31542 * 126.45322 * 0.02562 * 11 10 9 13 13 N 1.28418 * 110.50277 * 179.97438 * 12 11 10 14 14 N 1.28912 * 110.34206 * 0.02562 * 13 12 11 15 15 N 1.35400 * 126.45216 * 179.71341 * 11 10 9 16 16 C 1.46495 * 127.38767 * 359.96540 * 15 11 10 17 17 C 1.53001 * 109.47220 * 89.99837 * 16 15 11 18 18 H 1.08993 * 110.27476 * 55.63788 * 17 16 15 19 19 C 1.54943 * 110.30905 * 177.83893 * 17 16 15 20 20 C 1.55310 * 100.94246 * 155.36223 * 19 17 16 21 21 C 1.54381 * 102.24925 * 325.85874 * 20 19 17 22 22 O 1.43236 * 107.58754 * 21.36151 * 21 20 19 23 23 H 0.97002 * 120.00366 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.47229 * 59.99579 * 9 7 2 25 25 H 1.08999 * 109.47153 * 299.99786 * 9 7 2 26 26 H 1.08997 * 109.47466 * 210.00009 * 16 15 11 27 27 H 1.09005 * 109.46999 * 330.00008 * 16 15 11 28 28 H 1.08999 * 111.12417 * 273.27314 * 19 17 16 29 29 H 1.09003 * 111.13238 * 37.43901 * 19 17 16 30 30 H 1.09002 * 110.84593 * 207.67745 * 20 19 17 31 31 H 1.08993 * 111.02576 * 84.13459 * 20 19 17 32 32 H 1.08994 * 109.83254 * 261.84491 * 21 20 19 33 33 H 1.09005 * 109.82636 * 140.86914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 16 4.1149 -2.9004 -0.0001 11 6 5.8529 -2.6105 -0.0001 12 7 6.4497 -1.4382 0.0004 13 7 7.7256 -1.5831 0.0007 14 7 8.0345 -2.8347 -0.0001 15 7 6.8256 -3.5523 0.0052 16 6 6.6550 -5.0073 0.0128 17 6 6.5961 -5.5214 -1.4270 18 1 7.4832 -5.2073 -1.9768 19 6 6.4702 -7.0657 -1.4418 20 6 5.7975 -7.2934 -2.8230 21 6 4.8912 -6.0505 -2.9548 22 8 5.4094 -5.0422 -2.0794 23 1 -0.4851 0.8400 0.0004 24 1 3.8746 -0.6806 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 7.4964 -5.4691 0.5294 27 1 5.7285 -5.2617 0.5277 28 1 7.4506 -7.5401 -1.3995 29 1 5.8311 -7.4157 -0.6311 30 1 5.2039 -8.2076 -2.8194 31 1 6.5402 -7.3183 -3.6204 32 1 3.8716 -6.3039 -2.6645 33 1 4.9054 -5.6900 -3.9834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071807231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:26 Heat of formation + Delta-G solvation = 64.949666 kcal Electronic energy + Delta-G solvation = -18391.253511 eV Core-core repulsion = 15388.008304 eV Total energy + Delta-G solvation = -3003.245207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.42949 -39.67424 -35.12780 -33.14507 -32.42873 -31.77059 -30.62974 -29.46135 -26.61570 -23.67298 -22.80167 -22.39790 -21.88275 -21.38315 -17.92421 -17.09263 -16.79882 -16.62442 -16.38019 -15.67821 -14.95762 -14.47722 -14.04985 -13.79183 -13.37678 -13.30717 -12.88191 -12.71333 -12.35149 -12.20663 -11.98243 -11.83551 -11.45194 -11.19444 -10.99935 -10.88323 -10.54502 -10.50614 -10.29395 -10.17148 -9.88556 -9.64556 -9.40202 -8.76328 -7.24336 -6.25698 -4.31501 1.24897 1.43797 2.37357 2.65804 3.03335 3.27571 3.35344 3.42499 3.51698 4.10256 4.25194 4.30985 4.42947 4.55900 4.81238 4.91569 4.98855 5.07762 5.10735 5.19600 5.34529 5.43613 5.57896 5.63909 5.72126 5.74004 5.83796 6.30889 6.61318 6.63162 6.83224 7.28996 8.15662 8.69511 8.81933 9.29565 10.85082 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.005837 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.799277 B = 4795.489655 C = 5765.522699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.089 3.911 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.527 4.527 8 H 0.085 0.915 9 C 0.019 3.981 10 S 0.045 5.955 11 C 0.237 3.763 12 N -0.344 5.344 13 N -0.038 5.038 14 N -0.110 5.110 15 N -0.375 5.375 16 C 0.128 3.872 17 C 0.062 3.938 18 H 0.079 0.921 19 C -0.146 4.146 20 C -0.154 4.154 21 C 0.049 3.951 22 O -0.360 6.360 23 H 0.270 0.730 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.473 -16.161 -2.902 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.117 4.117 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.566 4.566 8 H 0.103 0.897 9 C -0.129 4.129 10 S 0.272 5.728 11 C -0.146 4.146 12 N -0.202 5.202 13 N -0.034 5.034 14 N -0.097 5.097 15 N -0.174 5.174 16 C 0.005 3.995 17 C 0.003 3.997 18 H 0.097 0.903 19 C -0.184 4.184 20 C -0.191 4.191 21 C -0.027 4.027 22 O -0.279 6.279 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.773 -16.018 -2.858 20.084 hybrid contribution 0.558 1.029 -0.149 1.180 sum 12.331 -14.989 -3.007 19.641 Atomic orbital electron populations 1.69845 1.06199 1.27665 1.48592 1.24754 0.94704 0.98811 0.93439 0.86851 0.80775 0.83150 0.79360 1.19604 1.20742 1.18114 1.20316 0.86190 0.95542 1.54575 0.89723 1.21850 1.01040 0.88116 1.01914 1.85916 0.81131 1.17763 1.88015 1.28447 1.01385 0.87209 0.97563 1.75027 0.99272 1.20387 1.25477 1.77760 1.07190 1.09329 1.09152 1.82277 1.03858 0.99242 1.24347 1.51345 1.03689 1.08268 1.54077 1.22187 1.05513 0.74075 0.97758 1.23408 0.90581 0.93543 0.92182 0.90278 1.23240 1.02441 0.94173 0.98579 1.23114 0.99524 0.99380 0.97115 1.23167 0.97829 0.87149 0.94582 1.88666 1.40894 1.38720 1.59605 0.91979 0.92731 0.93052 0.86509 0.86949 0.89432 0.89509 0.89684 0.90548 0.90590 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 2 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 3 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -14.34 9.68 -34.44 -0.33 -14.67 16 8 H 0.08 2.44 7.95 -52.49 -0.42 2.03 16 9 C 0.02 0.46 4.06 36.00 0.15 0.61 16 10 S 0.04 0.88 21.36 -107.50 -2.30 -1.41 16 11 C 0.24 4.63 8.15 -89.17 -0.73 3.91 16 12 N -0.34 -7.52 11.57 30.50 0.35 -7.17 16 13 N -0.04 -0.79 13.38 60.35 0.81 0.01 16 14 N -0.11 -2.00 13.93 60.35 0.84 -1.16 16 15 N -0.37 -6.17 3.67 -61.30 -0.23 -6.39 16 16 C 0.13 1.42 6.08 -4.04 -0.02 1.39 16 17 C 0.06 0.65 3.69 -25.71 -0.09 0.55 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.15 -0.96 6.57 -24.48 -0.16 -1.13 16 20 C -0.15 -1.04 7.02 -24.78 -0.17 -1.21 16 21 C 0.05 0.49 7.79 37.88 0.30 0.79 16 22 O -0.36 -4.83 10.68 -35.23 -0.38 -5.20 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 24 H 0.05 1.33 7.20 -51.91 -0.37 0.96 16 25 H 0.05 1.25 7.57 -51.92 -0.39 0.86 16 26 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.11 1.16 7.85 -51.93 -0.41 0.75 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 299.21 15.07 4.51 4.51 Total: -1.00 -32.16 299.21 -5.59 -37.76 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -4.14 Total: -4.84 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -1.17 Total: -7.38 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 2.55 Total: -39.89 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.38 Total: -5.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.30 Total: -1.41 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.16 -5.59 -37.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071807231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.705 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds