Wall clock time and date at job start Mon Mar 30 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47208 * 270.00125 * 3 2 1 5 5 H 1.48500 * 109.47103 * 29.99785 * 3 2 1 6 6 H 1.48502 * 109.47015 * 150.00049 * 3 2 1 7 7 C 1.37878 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00069 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00078 * 180.02562 * 7 2 1 10 10 S 1.80997 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.76199 * 100.00003 * 179.97438 * 10 9 7 12 12 N 1.31542 * 126.45322 * 0.02562 * 11 10 9 13 13 N 1.28418 * 110.50277 * 179.97438 * 12 11 10 14 14 N 1.28912 * 110.34206 * 0.02562 * 13 12 11 15 15 N 1.35400 * 126.45216 * 179.71341 * 11 10 9 16 16 C 1.46495 * 127.38767 * 359.96540 * 15 11 10 17 17 C 1.53001 * 109.47220 * 89.99837 * 16 15 11 18 18 H 1.08993 * 110.27476 * 55.63788 * 17 16 15 19 19 C 1.54943 * 110.30905 * 177.83893 * 17 16 15 20 20 C 1.55310 * 100.94246 * 155.36223 * 19 17 16 21 21 C 1.54381 * 102.24925 * 325.85874 * 20 19 17 22 22 O 1.43236 * 107.58754 * 21.36151 * 21 20 19 23 23 H 0.97002 * 120.00366 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.47229 * 59.99579 * 9 7 2 25 25 H 1.08999 * 109.47153 * 299.99786 * 9 7 2 26 26 H 1.08997 * 109.47466 * 210.00009 * 16 15 11 27 27 H 1.09005 * 109.46999 * 330.00008 * 16 15 11 28 28 H 1.08999 * 111.12417 * 273.27314 * 19 17 16 29 29 H 1.09003 * 111.13238 * 37.43901 * 19 17 16 30 30 H 1.09002 * 110.84593 * 207.67745 * 20 19 17 31 31 H 1.08993 * 111.02576 * 84.13459 * 20 19 17 32 32 H 1.08994 * 109.83254 * 261.84491 * 21 20 19 33 33 H 1.09005 * 109.82636 * 140.86914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 16 4.1149 -2.9004 -0.0001 11 6 5.8529 -2.6105 -0.0001 12 7 6.4497 -1.4382 0.0004 13 7 7.7256 -1.5831 0.0007 14 7 8.0345 -2.8347 -0.0001 15 7 6.8256 -3.5523 0.0052 16 6 6.6550 -5.0073 0.0128 17 6 6.5961 -5.5214 -1.4270 18 1 7.4832 -5.2073 -1.9768 19 6 6.4702 -7.0657 -1.4418 20 6 5.7975 -7.2934 -2.8230 21 6 4.8912 -6.0505 -2.9548 22 8 5.4094 -5.0422 -2.0794 23 1 -0.4851 0.8400 0.0004 24 1 3.8746 -0.6806 0.8905 25 1 3.8752 -0.6796 -0.8895 26 1 7.4964 -5.4691 0.5294 27 1 5.7285 -5.2617 0.5277 28 1 7.4506 -7.5401 -1.3995 29 1 5.8311 -7.4157 -0.6311 30 1 5.2039 -8.2076 -2.8194 31 1 6.5402 -7.3183 -3.6204 32 1 3.8716 -6.3039 -2.6645 33 1 4.9054 -5.6900 -3.9834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071807231.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:26 Heat of formation + Delta-G solvation = 42.781234 kcal Electronic energy + Delta-G solvation = -18392.214806 eV Core-core repulsion = 15388.008304 eV Total energy + Delta-G solvation = -3004.206503 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.92076 -40.46323 -36.35542 -35.25267 -33.32208 -33.13253 -31.59368 -31.50530 -27.59856 -25.24693 -24.29735 -24.06648 -22.52351 -22.32716 -19.46113 -18.80060 -17.98489 -17.83019 -17.60099 -16.67147 -16.46857 -15.82341 -15.68491 -14.95878 -14.79680 -14.50715 -14.33534 -14.10024 -13.90835 -13.17172 -12.93880 -12.76778 -12.74079 -12.62964 -12.25627 -12.18485 -12.06466 -11.99332 -11.82783 -11.72950 -11.44790 -11.33004 -10.89464 -10.51381 -8.83505 -8.40652 -6.50834 -0.21900 -0.09877 1.08359 1.08984 1.26056 1.35729 1.40894 1.50471 2.28859 2.76262 2.93836 3.23376 3.43518 3.59184 3.75685 3.92661 4.11725 4.16317 4.20869 4.35228 4.42426 4.53413 4.64647 4.66513 4.86725 4.88020 4.95871 5.01188 5.08864 5.23924 5.26725 5.99317 6.06162 6.51902 7.13887 7.29850 8.73478 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.021603 B = 0.005837 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.799277 B = 4795.489655 C = 5765.522699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.040 3.960 3 Si 0.931 3.069 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.013 3.987 10 S 0.085 5.915 11 C 0.222 3.778 12 N -0.375 5.375 13 N -0.061 5.061 14 N -0.096 5.096 15 N -0.354 5.354 16 C 0.111 3.889 17 C 0.058 3.942 18 H 0.070 0.930 19 C -0.133 4.133 20 C -0.145 4.145 21 C 0.039 3.961 22 O -0.398 6.398 23 H 0.275 0.725 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.156 0.844 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.123 -17.846 -2.754 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.162 4.162 3 Si 0.755 3.245 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.136 4.136 10 S 0.312 5.688 11 C -0.161 4.161 12 N -0.233 5.233 13 N -0.056 5.056 14 N -0.084 5.084 15 N -0.154 5.154 16 C -0.009 4.009 17 C -0.001 4.001 18 H 0.088 0.912 19 C -0.171 4.171 20 C -0.183 4.183 21 C -0.037 4.037 22 O -0.319 6.319 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.173 0.827 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.434 -17.738 -2.712 22.416 hybrid contribution 0.091 1.367 -0.222 1.388 sum 13.525 -16.371 -2.934 21.437 Atomic orbital electron populations 1.69947 1.07705 1.28834 1.49980 1.25542 0.95396 1.02196 0.93087 0.85926 0.79645 0.79318 0.79655 1.19006 1.19729 1.17762 1.20463 0.87961 0.94638 1.53921 0.92403 1.21593 0.99084 0.91617 1.01288 1.85601 0.81133 1.13441 1.88663 1.28264 1.01527 0.87687 0.98663 1.74930 0.99980 1.21994 1.26356 1.77744 1.06874 1.10296 1.10713 1.82168 1.04505 0.98816 1.22918 1.51687 1.02223 1.09797 1.51695 1.22872 1.07796 0.71030 0.99193 1.23528 0.89393 0.96222 0.90992 0.91188 1.23257 1.04143 0.90951 0.98769 1.23102 0.99220 0.98415 0.97539 1.23319 0.98514 0.88137 0.93773 1.88622 1.42004 1.40794 1.60433 0.91565 0.93175 0.93675 0.82683 0.85858 0.86865 0.88219 0.87750 0.89882 0.90799 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.96 21.45 0.30 -54.76 16 2 C 0.04 2.26 5.47 84.66 0.46 2.72 16 3 Si 0.93 43.70 27.47 68.60 1.88 45.58 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 7 C -0.53 -29.36 9.68 25.60 0.25 -29.11 16 8 H 0.06 3.44 7.95 -2.91 -0.02 3.41 16 9 C 0.01 0.64 4.06 71.24 0.29 0.93 16 10 S 0.08 3.32 21.36 -56.49 -1.21 2.11 16 11 C 0.22 8.49 8.15 179.84 1.47 9.96 16 12 N -0.37 -16.20 11.57 -57.41 -0.66 -16.87 16 13 N -0.06 -2.46 13.38 37.02 0.50 -1.96 16 14 N -0.10 -3.35 13.93 37.02 0.52 -2.83 16 15 N -0.35 -11.01 3.67 -347.87 -1.28 -12.29 16 16 C 0.11 2.14 6.08 86.38 0.53 2.67 16 17 C 0.06 1.06 3.69 31.26 0.12 1.17 16 18 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.13 -1.25 6.57 32.05 0.21 -1.04 16 20 C -0.15 -1.54 7.02 31.86 0.22 -1.32 16 21 C 0.04 0.72 7.79 72.45 0.56 1.29 16 22 O -0.40 -10.23 10.68 -148.98 -1.59 -11.82 16 23 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.05 2.44 7.20 -2.39 -0.02 2.42 16 25 H 0.04 2.21 7.57 -2.40 -0.02 2.19 16 26 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.12 2.17 7.85 -2.38 -0.02 2.15 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.72 8.06 -2.39 -0.02 0.70 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -70.21 299.21 3.62 -66.59 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: 1.06 Total: -1.03 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.11 Total: -12.72 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -0.63 Total: -88.71 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.59 Total: -11.82 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.21 Total: 2.11 kcal Total: -70.21 3.62 -66.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071807231.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.372 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds