Wall clock time and date at job start Mon Mar 30 2020 00:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 S 1.81000 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.76206 * 99.99919 * 179.97438 * 10 9 7 12 12 N 1.31537 * 126.45277 * 359.69001 * 11 10 9 13 13 N 1.28419 * 110.50346 * 179.81387 * 12 11 10 14 14 N 1.28907 * 110.33783 * 0.45603 * 13 12 11 15 15 N 1.35392 * 126.44898 * 179.97438 * 11 10 9 16 16 C 1.46494 * 127.39055 * 359.96995 * 15 11 10 17 17 C 1.53001 * 109.47244 * 89.99562 * 16 15 11 18 18 H 1.08995 * 109.82742 * 305.56912 * 17 16 15 19 19 C 1.54385 * 109.82843 * 184.58975 * 17 16 15 20 20 C 1.55314 * 102.25007 * 219.13147 * 19 17 16 21 21 C 1.54941 * 100.93943 * 34.13453 * 20 19 17 22 22 O 1.43241 * 109.82839 * 66.46059 * 17 16 15 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 25 25 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 26 26 H 1.09001 * 109.47504 * 210.00250 * 16 15 11 27 27 H 1.09007 * 109.47118 * 329.99696 * 16 15 11 28 28 H 1.08997 * 110.85219 * 337.31726 * 19 17 16 29 29 H 1.08996 * 110.84558 * 100.94402 * 19 17 16 30 30 H 1.09005 * 111.12282 * 276.21871 * 20 19 17 31 31 H 1.08994 * 111.16208 * 152.07100 * 20 19 17 32 32 H 1.09008 * 110.30807 * 204.63773 * 21 20 19 33 33 H 1.09000 * 110.39816 * 82.51596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4270 -3.8750 -0.0005 11 6 1.3068 -5.2351 0.0002 12 7 -0.0067 -5.1658 0.0064 13 7 -0.5193 -6.3432 0.0011 14 7 0.4101 -7.2365 0.0010 15 7 1.6361 -6.5484 0.0000 16 6 2.9814 -7.1282 -0.0015 17 6 3.4516 -7.3297 1.4405 18 1 3.3791 -6.3899 1.9877 19 6 4.9113 -7.8323 1.4499 20 6 4.8946 -8.8717 2.6039 21 6 3.4624 -9.4457 2.4618 22 8 2.6463 -8.3274 2.0791 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 0.8898 25 1 0.6239 -2.5567 -0.8903 26 1 2.9623 -8.0893 -0.5152 27 1 3.6668 -6.4547 -0.5163 28 1 5.1638 -8.3085 0.5026 29 1 5.6006 -7.0175 1.6717 30 1 5.0294 -8.3871 3.5710 31 1 5.6455 -9.6459 2.4470 32 1 3.1224 -9.8542 3.4135 33 1 3.4363 -10.2148 1.6898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071807232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:28 Heat of formation + Delta-G solvation = 58.910271 kcal Electronic energy + Delta-G solvation = -18116.495506 eV Core-core repulsion = 15112.988411 eV Total energy + Delta-G solvation = -3003.507095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.32917 -39.76471 -35.04526 -33.28410 -32.47383 -31.64572 -30.56936 -28.71422 -26.63393 -23.80694 -22.84719 -22.60398 -21.96742 -21.36428 -17.76581 -17.24424 -16.61740 -16.46819 -16.17259 -15.82004 -14.84861 -14.64194 -14.14987 -13.65871 -13.60593 -13.03361 -12.54342 -12.50980 -12.41830 -12.10606 -12.01353 -11.76553 -11.44766 -11.23803 -11.00281 -10.97001 -10.67103 -10.53568 -10.38689 -10.18801 -9.78964 -9.63396 -9.43642 -8.70999 -7.25963 -6.27586 -4.37449 1.36255 1.45817 2.45577 2.77931 3.16708 3.20710 3.27215 3.32212 3.51199 4.09516 4.24887 4.26309 4.46542 4.52366 4.78585 4.88546 5.01573 5.08928 5.15417 5.23861 5.35309 5.40804 5.47575 5.56528 5.71652 5.84400 5.90225 6.38473 6.76548 6.98391 7.10201 7.57600 7.82116 8.63012 8.94826 9.27072 10.82525 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.004595 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.957377 B = 6091.865223 C = 6879.999483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.068 0.932 9 C 0.074 3.926 10 S -0.026 6.026 11 C 0.227 3.773 12 N -0.331 5.331 13 N -0.045 5.045 14 N -0.090 5.090 15 N -0.370 5.370 16 C 0.116 3.884 17 C 0.063 3.937 18 H 0.095 0.905 19 C -0.146 4.146 20 C -0.155 4.155 21 C 0.047 3.953 22 O -0.365 6.365 23 H 0.269 0.731 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.538 -15.459 2.505 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.087 0.913 9 C -0.073 4.073 10 S 0.200 5.800 11 C -0.156 4.156 12 N -0.187 5.187 13 N -0.041 5.041 14 N -0.077 5.077 15 N -0.170 5.170 16 C -0.007 4.007 17 C 0.004 3.996 18 H 0.112 0.888 19 C -0.184 4.184 20 C -0.192 4.192 21 C -0.029 4.029 22 O -0.284 6.284 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.994 -15.918 2.522 20.090 hybrid contribution 0.210 0.910 -0.040 0.934 sum 12.203 -15.009 2.483 19.502 Atomic orbital electron populations 1.69977 1.06131 1.27713 1.47651 1.24939 0.94975 0.99207 0.94206 0.86322 0.79649 0.82050 0.78449 1.20209 1.19495 1.20799 1.20540 0.93263 0.88395 1.54915 0.91346 1.21493 0.93740 0.89041 1.03064 1.85617 1.10719 0.94256 1.89419 1.28316 0.97348 0.90922 0.99016 1.75064 1.03709 1.15665 1.24266 1.77823 1.22213 0.94292 1.09748 1.82367 0.84986 1.17634 1.22692 1.51386 1.08315 1.03596 1.53689 1.22429 0.78344 1.01296 0.98641 1.23202 0.90310 0.94001 0.92108 0.88754 1.23116 0.95381 0.99945 0.99988 1.23271 0.97746 0.98824 0.99398 1.23427 0.89564 0.89587 1.00367 1.88607 1.33328 1.28598 1.77829 0.92111 0.92430 0.92444 0.87470 0.86659 0.89850 0.88901 0.90071 0.89631 0.89648 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.97 13.29 55.43 0.74 -24.24 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 3 Si 0.91 20.24 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -13.94 9.13 -34.44 -0.31 -14.25 16 8 H 0.07 1.72 7.71 -52.49 -0.40 1.31 16 9 C 0.07 1.85 4.99 36.00 0.18 2.03 16 10 S -0.03 -0.51 21.71 -107.50 -2.33 -2.84 16 11 C 0.23 4.58 8.15 -89.19 -0.73 3.85 16 12 N -0.33 -7.62 11.57 30.50 0.35 -7.26 16 13 N -0.04 -0.99 13.38 60.35 0.81 -0.18 16 14 N -0.09 -1.78 13.93 60.35 0.84 -0.93 16 15 N -0.37 -6.45 3.66 -61.30 -0.22 -6.67 16 16 C 0.12 1.38 5.91 -4.04 -0.02 1.36 16 17 C 0.06 0.70 3.77 -26.00 -0.10 0.61 16 18 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.15 -1.02 6.54 -24.78 -0.16 -1.19 16 20 C -0.15 -1.01 7.16 -24.48 -0.18 -1.19 16 21 C 0.05 0.41 7.78 38.18 0.30 0.71 16 22 O -0.36 -4.83 10.99 -35.23 -0.39 -5.22 16 23 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.06 1.56 8.14 -51.91 -0.42 1.13 16 25 H 0.06 1.55 8.14 -51.92 -0.42 1.12 16 26 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.12 1.13 7.85 -51.93 -0.41 0.73 16 28 H 0.08 0.45 7.85 -51.93 -0.41 0.05 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 303.25 15.07 4.57 4.57 Total: -1.00 -31.66 303.25 -5.94 -37.60 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: -4.16 Total: -3.82 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.12 Total: -6.22 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 2.51 Total: -39.29 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.39 Total: -5.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.33 Total: -2.84 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.66 -5.94 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071807232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.507 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds