Wall clock time and date at job start Mon Mar 30 2020 00:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 S 1.81000 * 109.47203 * 180.02562 * 9 7 2 11 11 C 1.76206 * 99.99919 * 179.97438 * 10 9 7 12 12 N 1.31537 * 126.45277 * 359.69001 * 11 10 9 13 13 N 1.28419 * 110.50346 * 179.81387 * 12 11 10 14 14 N 1.28907 * 110.33783 * 0.45603 * 13 12 11 15 15 N 1.35392 * 126.44898 * 179.97438 * 11 10 9 16 16 C 1.46494 * 127.39055 * 359.96995 * 15 11 10 17 17 C 1.53001 * 109.47244 * 89.99562 * 16 15 11 18 18 H 1.08995 * 109.82742 * 305.56912 * 17 16 15 19 19 C 1.54385 * 109.82843 * 184.58975 * 17 16 15 20 20 C 1.55314 * 102.25007 * 219.13147 * 19 17 16 21 21 C 1.54941 * 100.93943 * 34.13453 * 20 19 17 22 22 O 1.43241 * 109.82839 * 66.46059 * 17 16 15 23 23 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 25 25 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 26 26 H 1.09001 * 109.47504 * 210.00250 * 16 15 11 27 27 H 1.09007 * 109.47118 * 329.99696 * 16 15 11 28 28 H 1.08997 * 110.85219 * 337.31726 * 19 17 16 29 29 H 1.08996 * 110.84558 * 100.94402 * 19 17 16 30 30 H 1.09005 * 111.12282 * 276.21871 * 20 19 17 31 31 H 1.08994 * 111.16208 * 152.07100 * 20 19 17 32 32 H 1.09008 * 110.30807 * 204.63773 * 21 20 19 33 33 H 1.09000 * 110.39816 * 82.51596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4270 -3.8750 -0.0005 11 6 1.3068 -5.2351 0.0002 12 7 -0.0067 -5.1658 0.0064 13 7 -0.5193 -6.3432 0.0011 14 7 0.4101 -7.2365 0.0010 15 7 1.6361 -6.5484 0.0000 16 6 2.9814 -7.1282 -0.0015 17 6 3.4516 -7.3297 1.4405 18 1 3.3791 -6.3899 1.9877 19 6 4.9113 -7.8323 1.4499 20 6 4.8946 -8.8717 2.6039 21 6 3.4624 -9.4457 2.4618 22 8 2.6463 -8.3274 2.0791 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5570 0.8898 25 1 0.6239 -2.5567 -0.8903 26 1 2.9623 -8.0893 -0.5152 27 1 3.6668 -6.4547 -0.5163 28 1 5.1638 -8.3085 0.5026 29 1 5.6006 -7.0175 1.6717 30 1 5.0294 -8.3871 3.5710 31 1 5.6455 -9.6459 2.4470 32 1 3.1224 -9.8542 3.4135 33 1 3.4363 -10.2148 1.6898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071807232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:28 Heat of formation + Delta-G solvation = 37.357702 kcal Electronic energy + Delta-G solvation = -18117.430095 eV Core-core repulsion = 15112.988411 eV Total energy + Delta-G solvation = -3004.441685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.91958 -40.55858 -36.35460 -35.31013 -33.29163 -33.18198 -31.55850 -30.76050 -27.64851 -25.55437 -24.44789 -24.14189 -22.65181 -22.28841 -19.31393 -18.37120 -18.08907 -17.81535 -17.62800 -16.85357 -16.69363 -15.58837 -15.43283 -14.99916 -14.56354 -14.45686 -14.34717 -14.16855 -13.79386 -13.12359 -12.93651 -12.74440 -12.71812 -12.67482 -12.46064 -12.10900 -12.08532 -11.99002 -11.80948 -11.64334 -11.51926 -11.34813 -10.73126 -10.57965 -8.88788 -8.30828 -6.49199 -0.19721 -0.13271 1.09136 1.11029 1.33168 1.47046 1.47880 1.60318 2.39138 2.75863 3.04777 3.20726 3.41117 3.54757 3.77261 3.88662 4.10755 4.15765 4.22587 4.26627 4.37392 4.59805 4.80057 4.85438 4.87908 4.92979 5.01997 5.02693 5.07831 5.24128 5.53318 5.78459 6.00239 6.60156 7.21242 7.32242 8.81091 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.004595 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.957377 B = 6091.865223 C = 6879.999483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.065 3.935 10 S 0.054 5.946 11 C 0.210 3.790 12 N -0.370 5.370 13 N -0.069 5.069 14 N -0.086 5.086 15 N -0.350 5.350 16 C 0.100 3.900 17 C 0.060 3.940 18 H 0.073 0.927 19 C -0.136 4.136 20 C -0.147 4.147 21 C 0.037 3.963 22 O -0.404 6.404 23 H 0.271 0.729 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.131 0.869 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.934 -16.140 2.319 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.804 3.196 4 H -0.194 1.194 5 H -0.178 1.178 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.100 0.900 9 C -0.084 4.084 10 S 0.280 5.720 11 C -0.174 4.174 12 N -0.227 5.227 13 N -0.065 5.065 14 N -0.073 5.073 15 N -0.150 5.150 16 C -0.021 4.021 17 C 0.000 4.000 18 H 0.091 0.909 19 C -0.174 4.174 20 C -0.184 4.184 21 C -0.039 4.039 22 O -0.324 6.324 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.149 0.851 27 H 0.160 0.840 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.430 -16.640 2.340 22.813 hybrid contribution -0.805 0.929 0.048 1.230 sum 14.625 -15.711 2.388 21.597 Atomic orbital electron populations 1.70125 1.08141 1.28779 1.48938 1.25982 0.95735 1.03320 0.93442 0.85202 0.78639 0.76978 0.78792 1.19440 1.17827 1.20759 1.20937 0.93943 0.89048 1.54412 0.90002 1.21127 0.94896 0.92260 1.00088 1.84964 1.06816 0.90743 1.89487 1.28366 0.96948 0.92277 0.99770 1.74965 1.05512 1.16704 1.25525 1.77796 1.23109 0.94250 1.11326 1.82235 0.85741 1.17679 1.21689 1.51716 1.09413 1.02473 1.51375 1.23130 0.75836 1.02878 1.00226 1.23260 0.92818 0.93202 0.90688 0.90894 1.23157 0.92352 1.00531 1.01395 1.23266 0.96766 0.99202 0.99167 1.23664 0.90618 0.88830 1.00785 1.88571 1.35577 1.30057 1.78217 0.92013 0.95700 0.95512 0.85087 0.84016 0.87488 0.87496 0.90376 0.86977 0.89598 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.89 13.29 21.45 0.28 -53.61 16 2 C 0.02 0.93 5.46 84.66 0.46 1.40 16 3 Si 0.98 41.05 29.54 68.60 2.03 43.08 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -28.64 9.13 25.60 0.23 -28.41 16 8 H 0.08 3.99 7.71 -2.91 -0.02 3.97 16 9 C 0.06 3.34 4.99 71.23 0.36 3.69 16 10 S 0.05 2.05 21.71 -56.49 -1.23 0.83 16 11 C 0.21 8.48 8.15 179.85 1.47 9.95 16 12 N -0.37 -17.59 11.57 -57.41 -0.66 -18.25 16 13 N -0.07 -3.13 13.38 37.02 0.50 -2.64 16 14 N -0.09 -3.39 13.93 37.02 0.52 -2.88 16 15 N -0.35 -11.86 3.66 -347.86 -1.27 -13.13 16 16 C 0.10 2.12 5.91 86.38 0.51 2.63 16 17 C 0.06 1.21 3.77 31.06 0.12 1.32 16 18 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 19 C -0.14 -1.41 6.54 31.86 0.21 -1.20 16 20 C -0.15 -1.45 7.16 32.05 0.23 -1.22 16 21 C 0.04 0.57 7.78 72.65 0.56 1.14 16 22 O -0.40 -10.24 10.99 -148.98 -1.64 -11.88 16 23 H 0.27 14.81 8.31 -92.70 -0.77 14.04 16 24 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.03 1.51 8.14 -2.40 -0.02 1.49 16 26 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.14 2.27 7.85 -2.38 -0.02 2.25 16 28 H 0.11 0.63 7.85 -2.39 -0.02 0.61 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -71.28 303.25 3.78 -67.50 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.12 Total: 1.67 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.15 Total: -10.69 kcal Atomic # 7 Polarization: -89.86 SS G_CDS: -0.64 Total: -90.51 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.64 Total: -11.88 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.23 Total: 0.83 kcal Total: -71.28 3.78 -67.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071807232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.859 kcal (2) G-P(sol) polarization free energy of solvation -71.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds