Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48497 * 109.46938 * 274.98481 * 3 2 1 5 5 H 1.48495 * 109.47208 * 34.98729 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98484 * 3 2 1 7 7 C 1.39896 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 197.74805 * 7 2 1 9 9 C 1.41160 * 119.99770 * 17.75253 * 7 2 1 10 10 C 1.40862 * 120.16399 * 25.03819 * 9 7 2 11 11 C 1.36377 * 119.82759 * 180.25092 * 10 9 7 12 12 C 1.39482 * 120.16470 * 359.48307 * 11 10 9 13 13 N 1.39243 * 119.83182 * 180.29299 * 12 11 10 14 14 C 1.34780 * 120.00114 * 324.02976 * 13 12 11 15 15 O 1.21579 * 119.99801 * 5.17683 * 14 13 12 16 16 N 1.34775 * 120.00107 * 185.18249 * 14 13 12 17 17 C 1.46493 * 120.00342 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47496 * 179.97438 * 17 16 14 19 19 F 1.39901 * 109.47373 * 300.00627 * 18 17 16 20 20 F 1.39904 * 109.47095 * 60.00424 * 18 17 16 21 21 C 1.39478 * 120.33728 * 0.26800 * 12 11 10 22 22 C 1.36373 * 120.16762 * 359.97438 * 21 12 11 23 23 H 0.97000 * 119.99267 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.09076 * 0.02984 * 10 9 7 25 25 H 1.08003 * 119.91884 * 179.75370 * 11 10 9 26 26 H 0.97001 * 120.00250 * 144.02143 * 13 12 11 27 27 H 0.96998 * 119.99986 * 359.97438 * 16 14 13 28 28 H 1.08997 * 109.47693 * 300.00384 * 17 16 14 29 29 H 1.09008 * 109.46905 * 60.00186 * 17 16 14 30 30 H 1.09004 * 109.47449 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.91839 * 180.02562 * 21 12 11 32 32 H 1.08000 * 120.08956 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6199 0.8028 6 1 3.5891 1.4120 0.5920 7 6 2.0083 -1.2115 -0.0005 8 1 3.0497 -1.2340 0.2846 9 6 1.3528 -2.4047 -0.3738 10 6 0.2274 -2.3592 -1.2198 11 6 -0.4036 -3.5158 -1.5720 12 6 0.0691 -4.7423 -1.1054 13 7 -0.5769 -5.9193 -1.4742 14 6 -1.9176 -5.9377 -1.6117 15 8 -2.5536 -4.9069 -1.5062 16 7 -2.5531 -7.0987 -1.8659 17 6 -4.0103 -7.1187 -2.0148 18 6 -4.4746 -8.5490 -2.2968 19 9 -3.8789 -9.0087 -3.4763 20 9 -4.1031 -9.3782 -1.2330 21 6 1.1860 -4.7958 -0.2716 22 6 1.8245 -3.6473 0.0931 23 1 -0.4849 0.8401 0.0004 24 1 -0.1369 -1.4106 -1.5858 25 1 -1.2690 -3.4823 -2.2173 26 1 -0.0621 -6.7261 -1.6324 27 1 -2.0456 -7.9210 -1.9504 28 1 -4.4745 -6.7602 -1.0961 29 1 -4.2998 -6.4731 -2.8440 30 1 -5.5588 -8.5639 -2.4081 31 1 1.5465 -5.7491 0.0854 32 1 2.6895 -3.6902 0.7385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072503022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -111.315388 kcal Electronic energy + Delta-G solvation = -19684.124742 eV Core-core repulsion = 16087.102971 eV Total energy + Delta-G solvation = -3597.021771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.28072 -47.27308 -39.87960 -37.45961 -34.97296 -34.28653 -32.92757 -29.95218 -29.40203 -28.49386 -24.95088 -23.17661 -21.47352 -21.09262 -20.13725 -18.33380 -17.68016 -17.67127 -17.28302 -16.82756 -15.87318 -15.32251 -15.10710 -14.70503 -14.20850 -14.00085 -13.85797 -13.64445 -13.34833 -12.81305 -12.71380 -12.62624 -12.04324 -11.81262 -11.45876 -11.37391 -11.11980 -10.91051 -10.48350 -10.02003 -9.87135 -9.52005 -9.23024 -9.05948 -8.65922 -7.48075 -6.97744 -6.70500 -4.25723 2.67724 2.87555 3.09919 3.10367 3.13850 3.18708 3.41577 3.67053 3.86754 3.96189 4.29664 4.40373 4.66877 4.67943 5.32602 5.35230 5.73894 6.18299 6.34512 6.45450 6.79397 6.85866 7.08693 7.13796 7.31685 7.35229 7.65895 7.86158 8.03024 8.09954 8.30177 8.47049 8.67407 8.92349 8.93864 9.10894 10.22595 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.003485 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.404790 B = 8033.637448 C = 8375.205141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.157 4.157 11 C -0.085 4.085 12 C 0.007 3.993 13 N -0.664 5.664 14 C 0.697 3.303 15 O -0.573 6.573 16 N -0.753 5.753 17 C 0.093 3.907 18 C 0.254 3.746 19 F -0.203 7.203 20 F -0.202 7.202 21 C -0.104 4.104 22 C -0.216 4.216 23 H 0.281 0.719 24 H 0.119 0.881 25 H 0.107 0.893 26 H 0.391 0.609 27 H 0.397 0.603 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.089 0.911 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 -13.203 -4.481 15.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.177 4.177 11 C -0.105 4.105 12 C -0.085 4.085 13 N -0.309 5.309 14 C 0.398 3.602 15 O -0.450 6.450 16 N -0.411 5.411 17 C -0.033 4.033 18 C 0.200 3.800 19 F -0.184 7.184 20 F -0.184 7.184 21 C -0.125 4.125 22 C -0.236 4.236 23 H 0.092 0.908 24 H 0.137 0.863 25 H 0.125 0.875 26 H 0.224 0.776 27 H 0.231 0.769 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.107 0.893 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.724 -12.108 -4.350 15.006 hybrid contribution 0.792 -0.212 -0.004 0.820 sum -6.931 -12.321 -4.354 14.792 Atomic orbital electron populations 1.69875 1.07549 1.29213 1.34734 1.25933 0.94714 1.01328 0.92372 0.86304 0.80556 0.80761 0.79110 1.19361 1.20326 1.18599 1.19555 0.98099 0.91325 1.40066 0.90392 1.17668 0.91216 0.92043 0.88755 1.20991 0.99066 0.96773 1.00900 1.20568 0.98841 0.91480 0.99598 1.16989 0.99346 0.84283 1.07891 1.42029 1.04243 1.12901 1.71762 1.15939 0.82379 0.83326 0.78601 1.90941 1.65716 1.31087 1.57236 1.44851 1.06518 1.09881 1.79883 1.22239 0.82203 0.93760 1.05137 1.22302 0.98232 0.87333 0.72114 1.93013 1.86598 1.90422 1.48386 1.93016 1.93613 1.74598 1.57146 1.20039 0.97086 0.97201 0.98164 1.20532 1.03916 0.92448 1.06715 0.90838 0.86330 0.87483 0.77556 0.76948 0.88551 0.88609 0.85677 0.89269 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.01 10.98 55.55 0.61 -20.40 16 2 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 3 Si 0.91 18.87 29.60 -169.99 -5.03 13.84 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.35 9.03 -37.85 -0.34 -12.69 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.11 2.87 5.57 -106.80 -0.59 2.27 16 10 C -0.16 -4.27 8.63 -39.26 -0.34 -4.61 16 11 C -0.08 -2.15 8.61 -39.79 -0.34 -2.49 16 12 C 0.01 0.17 6.30 -83.57 -0.53 -0.36 16 13 N -0.66 -12.01 5.31 -14.10 -0.07 -12.08 16 14 C 0.70 12.69 8.40 -86.92 -0.73 11.96 16 15 O -0.57 -12.98 13.78 5.30 0.07 -12.90 16 16 N -0.75 -9.74 5.42 -65.23 -0.35 -10.10 16 17 C 0.09 0.94 5.91 -4.05 -0.02 0.92 16 18 C 0.25 1.90 5.42 37.16 0.20 2.10 16 19 F -0.20 -1.91 17.20 2.25 0.04 -1.87 16 20 F -0.20 -1.94 17.20 2.25 0.04 -1.90 16 21 C -0.10 -2.33 9.90 -39.79 -0.39 -2.72 16 22 C -0.22 -5.30 9.74 -39.26 -0.38 -5.68 16 23 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 24 H 0.12 3.33 6.19 -52.49 -0.32 3.01 16 25 H 0.11 2.74 6.24 -52.48 -0.33 2.42 16 26 H 0.39 5.51 8.84 -40.82 -0.36 5.15 16 27 H 0.40 4.23 8.38 -40.82 -0.34 3.89 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -32.29 289.83 -6.91 -39.20 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -3.02 Total: 11.34 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.56 Total: -9.49 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.18 Total: -42.58 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.08 Total: -3.77 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.29 -6.91 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072503022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.116 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds