Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48497 * 109.46938 * 274.98481 * 3 2 1 5 5 H 1.48495 * 109.47208 * 34.98729 * 3 2 1 6 6 H 1.48500 * 109.46984 * 154.98484 * 3 2 1 7 7 C 1.39896 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00144 * 197.74805 * 7 2 1 9 9 C 1.41160 * 119.99770 * 17.75253 * 7 2 1 10 10 C 1.40862 * 120.16399 * 25.03819 * 9 7 2 11 11 C 1.36377 * 119.82759 * 180.25092 * 10 9 7 12 12 C 1.39482 * 120.16470 * 359.48307 * 11 10 9 13 13 N 1.39243 * 119.83182 * 180.29299 * 12 11 10 14 14 C 1.34780 * 120.00114 * 324.02976 * 13 12 11 15 15 O 1.21579 * 119.99801 * 5.17683 * 14 13 12 16 16 N 1.34775 * 120.00107 * 185.18249 * 14 13 12 17 17 C 1.46493 * 120.00342 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47496 * 179.97438 * 17 16 14 19 19 F 1.39901 * 109.47373 * 300.00627 * 18 17 16 20 20 F 1.39904 * 109.47095 * 60.00424 * 18 17 16 21 21 C 1.39478 * 120.33728 * 0.26800 * 12 11 10 22 22 C 1.36373 * 120.16762 * 359.97438 * 21 12 11 23 23 H 0.97000 * 119.99267 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.09076 * 0.02984 * 10 9 7 25 25 H 1.08003 * 119.91884 * 179.75370 * 11 10 9 26 26 H 0.97001 * 120.00250 * 144.02143 * 13 12 11 27 27 H 0.96998 * 119.99986 * 359.97438 * 16 14 13 28 28 H 1.08997 * 109.47693 * 300.00384 * 17 16 14 29 29 H 1.09008 * 109.46905 * 60.00186 * 17 16 14 30 30 H 1.09004 * 109.47449 * 180.02562 * 18 17 16 31 31 H 1.08000 * 119.91839 * 180.02562 * 21 12 11 32 32 H 1.08000 * 120.08956 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3850 2.1072 -1.3948 5 1 1.4971 2.6199 0.8028 6 1 3.5891 1.4120 0.5920 7 6 2.0083 -1.2115 -0.0005 8 1 3.0497 -1.2340 0.2846 9 6 1.3528 -2.4047 -0.3738 10 6 0.2274 -2.3592 -1.2198 11 6 -0.4036 -3.5158 -1.5720 12 6 0.0691 -4.7423 -1.1054 13 7 -0.5769 -5.9193 -1.4742 14 6 -1.9176 -5.9377 -1.6117 15 8 -2.5536 -4.9069 -1.5062 16 7 -2.5531 -7.0987 -1.8659 17 6 -4.0103 -7.1187 -2.0148 18 6 -4.4746 -8.5490 -2.2968 19 9 -3.8789 -9.0087 -3.4763 20 9 -4.1031 -9.3782 -1.2330 21 6 1.1860 -4.7958 -0.2716 22 6 1.8245 -3.6473 0.0931 23 1 -0.4849 0.8401 0.0004 24 1 -0.1369 -1.4106 -1.5858 25 1 -1.2690 -3.4823 -2.2173 26 1 -0.0621 -6.7261 -1.6324 27 1 -2.0456 -7.9210 -1.9504 28 1 -4.4745 -6.7602 -1.0961 29 1 -4.2998 -6.4731 -2.8440 30 1 -5.5588 -8.5639 -2.4081 31 1 1.5465 -5.7491 0.0854 32 1 2.6895 -3.6902 0.7385 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072503022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -133.290659 kcal Electronic energy + Delta-G solvation = -19685.077662 eV Core-core repulsion = 16087.102971 eV Total energy + Delta-G solvation = -3597.974690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.95306 -47.95352 -41.39951 -39.25140 -36.41984 -35.83600 -34.71461 -31.47309 -31.19206 -29.94639 -26.73181 -24.18001 -23.17988 -22.76637 -21.72949 -19.67920 -19.21920 -18.62163 -18.36070 -18.07765 -17.06924 -16.94990 -16.51304 -16.01191 -15.71211 -15.30476 -15.05347 -14.81528 -14.49980 -14.33438 -14.06043 -13.90926 -13.64963 -13.40315 -13.32088 -12.80335 -12.66031 -12.31057 -12.06499 -11.76190 -11.72642 -11.29202 -11.02398 -10.51446 -10.25873 -9.43233 -8.84800 -8.59608 -6.25036 0.87567 1.16458 1.39307 1.48666 1.54083 1.65163 2.14740 2.22693 2.74349 2.77983 3.27964 3.31607 3.60972 3.76132 3.94991 4.44790 4.50440 4.54917 4.56105 4.98662 5.10936 5.18698 5.27467 5.31594 5.45025 5.66889 5.76862 6.09688 6.13109 6.14882 6.37458 6.70660 6.94756 7.03540 7.07043 7.60743 8.35481 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047494 B = 0.003485 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.404790 B = 8033.637448 C = 8375.205141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.074 3.926 10 C -0.181 4.181 11 C -0.099 4.099 12 C 0.021 3.979 13 N -0.656 5.656 14 C 0.694 3.306 15 O -0.621 6.621 16 N -0.734 5.734 17 C 0.083 3.917 18 C 0.263 3.737 19 F -0.213 7.213 20 F -0.213 7.213 21 C -0.099 4.099 22 C -0.224 4.224 23 H 0.287 0.713 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.414 0.586 27 H 0.411 0.589 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.175 0.825 31 H 0.133 0.867 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -14.943 -4.417 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.071 3.929 10 C -0.202 4.202 11 C -0.119 4.119 12 C -0.073 4.073 13 N -0.304 5.304 14 C 0.395 3.605 15 O -0.501 6.501 16 N -0.392 5.392 17 C -0.043 4.043 18 C 0.210 3.790 19 F -0.194 7.194 20 F -0.195 7.195 21 C -0.119 4.119 22 C -0.244 4.244 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.251 0.749 27 H 0.247 0.753 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.192 0.808 31 H 0.151 0.849 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.596 -13.949 -4.303 16.456 hybrid contribution 0.657 0.139 -0.055 0.674 sum -6.939 -13.810 -4.359 16.058 Atomic orbital electron populations 1.69954 1.09270 1.30473 1.35782 1.26854 0.95412 1.04855 0.91246 0.85144 0.79216 0.75758 0.79277 1.18858 1.19478 1.17702 1.19839 0.98499 0.92409 1.41790 0.90020 1.18006 0.91758 0.93587 0.89537 1.20886 1.00320 0.96546 1.02413 1.20598 0.98707 0.92482 1.00115 1.17035 0.99001 0.84896 1.06341 1.41808 1.04610 1.12365 1.71632 1.16120 0.82192 0.83984 0.78202 1.90921 1.66661 1.33295 1.59227 1.44697 1.07871 1.08675 1.77970 1.22538 0.80168 0.96191 1.05355 1.22567 1.00323 0.84964 0.71144 1.92998 1.87065 1.90376 1.48979 1.93000 1.93909 1.74766 1.57781 1.20388 0.96138 0.98398 0.96959 1.20815 1.04469 0.92360 1.06715 0.90294 0.88641 0.88505 0.74855 0.75288 0.88567 0.88396 0.80781 0.84881 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.88 10.98 21.82 0.24 -45.64 16 2 C 0.03 1.61 5.13 85.24 0.44 2.04 16 3 Si 0.99 39.23 29.60 68.60 2.03 41.26 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.50 -27.29 9.03 23.39 0.21 -27.07 16 8 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 9 C 0.07 4.10 5.57 -21.27 -0.12 3.99 16 10 C -0.18 -10.31 8.63 22.48 0.19 -10.12 16 11 C -0.10 -5.15 8.61 22.14 0.19 -4.96 16 12 C 0.02 0.94 6.30 38.56 0.24 1.19 16 13 N -0.66 -22.53 5.31 -316.78 -1.68 -24.22 16 14 C 0.69 24.50 8.40 179.05 1.50 26.00 16 15 O -0.62 -28.29 13.78 -3.97 -0.05 -28.34 16 16 N -0.73 -17.51 5.42 -478.56 -2.59 -20.11 16 17 C 0.08 1.51 5.91 86.38 0.51 2.02 16 18 C 0.26 3.12 5.42 71.98 0.39 3.51 16 19 F -0.21 -3.41 17.20 44.97 0.77 -2.64 16 20 F -0.21 -3.47 17.20 44.97 0.77 -2.70 16 21 C -0.10 -4.20 9.90 22.13 0.22 -3.98 16 22 C -0.22 -10.87 9.74 22.48 0.22 -10.65 16 23 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 24 H 0.10 5.74 6.19 -2.91 -0.02 5.72 16 25 H 0.10 5.18 6.24 -2.91 -0.02 5.16 16 26 H 0.41 10.39 8.84 -92.71 -0.82 9.57 16 27 H 0.41 7.63 8.38 -92.71 -0.78 6.85 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.18 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -72.94 289.83 3.08 -69.86 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.41 Total: 30.57 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.00 Total: -18.05 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.04 Total: -89.96 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.55 Total: -5.34 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -72.94 3.08 -69.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072503022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.430 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds