Wall clock time and date at job start Mon Mar 30 2020 00:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47313 * 270.00166 * 3 2 1 5 5 H 1.48506 * 109.46847 * 30.00407 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99998 * 3 2 1 7 7 C 1.37878 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00358 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99478 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46978 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47091 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.46983 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.47372 * 63.60920 * 12 11 10 14 14 C 1.81403 * 102.99920 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47315 * 179.97438 * 14 12 11 16 16 C 1.38221 * 120.01004 * 89.99401 * 15 14 12 17 17 C 1.38229 * 120.02594 * 180.02562 * 16 15 14 18 18 C 1.38263 * 120.04920 * 359.97438 * 17 16 15 19 19 C 1.38175 * 120.02891 * 0.02562 * 18 17 16 20 20 C 1.38435 * 120.01469 * 270.00061 * 15 14 12 21 21 F 1.35093 * 120.02480 * 0.02562 * 20 15 14 22 22 H 0.97002 * 120.00488 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47245 * 60.00501 * 9 7 2 24 24 H 1.09000 * 109.47196 * 300.00211 * 9 7 2 25 25 H 1.08996 * 109.47107 * 59.99947 * 10 9 7 26 26 H 1.09000 * 109.46946 * 299.99894 * 10 9 7 27 27 H 1.08996 * 109.47366 * 59.99888 * 11 10 9 28 28 H 1.09000 * 109.46961 * 299.99667 * 11 10 9 29 29 H 1.09001 * 109.47039 * 59.99563 * 14 12 11 30 30 H 1.08999 * 109.47064 * 299.99497 * 14 12 11 31 31 H 1.08002 * 119.98827 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.97486 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.99008 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.01835 * 179.74986 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 16 6.1562 -4.3468 -0.0005 13 8 5.7527 -4.9915 -1.2008 14 6 7.9586 -4.1423 -0.0011 15 6 8.6180 -5.4974 -0.0011 16 6 8.9199 -6.1194 -1.1979 17 6 9.5242 -7.3626 -1.1983 18 6 9.8278 -7.9851 -0.0016 19 6 9.5269 -7.3653 1.1961 20 6 8.9213 -6.1199 1.1977 21 9 8.6261 -5.5132 2.3680 22 1 -0.4851 0.8400 0.0004 23 1 3.8751 -0.6797 0.8894 24 1 3.8745 -0.6808 -0.8905 25 1 3.6578 -3.1505 -0.8896 26 1 3.6585 -3.1501 0.8903 27 1 5.9148 -2.1226 0.8900 28 1 5.9148 -2.1228 -0.8899 29 1 8.2621 -3.5910 0.8888 30 1 8.2614 -3.5907 -0.8912 31 1 8.6836 -5.6338 -2.1333 32 1 9.7601 -7.8476 -2.1339 33 1 10.3003 -8.9563 -0.0030 34 1 9.7604 -7.8536 2.1307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078700817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:28 Heat of formation + Delta-G solvation = -73.404169 kcal Electronic energy + Delta-G solvation = -17444.216424 eV Core-core repulsion = 14382.759032 eV Total energy + Delta-G solvation = -3061.457392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.09612 -39.28094 -35.55687 -34.57131 -33.19025 -32.08466 -30.80084 -28.19852 -27.33183 -23.36603 -23.04426 -21.91128 -20.19584 -17.86910 -17.43874 -16.73174 -16.66086 -16.13501 -15.99088 -15.13210 -14.95589 -14.61212 -14.30895 -14.01642 -13.75098 -13.41048 -13.25397 -12.75575 -12.54630 -12.33823 -12.10960 -11.82963 -11.64736 -11.36449 -11.13396 -10.84427 -10.64046 -9.99844 -9.79849 -9.71355 -9.22037 -9.15057 -8.81334 -8.54568 -8.03038 -6.04631 -4.02928 0.72893 0.90576 1.68648 2.71670 3.29761 3.34026 3.36947 3.39904 3.83113 3.98625 4.30043 4.44299 4.45377 4.64385 4.88198 5.00253 5.16246 5.28043 5.34228 5.35371 5.46074 5.64687 5.77148 5.82439 6.02497 6.04928 6.11919 6.36006 6.49256 6.59302 6.83095 7.24475 7.38153 7.77652 8.53191 9.00501 9.57469 11.08875 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043335 B = 0.003423 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.968638 B = 8178.851895 C = 8337.998881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.439 4.439 12 S 1.237 4.763 13 O -0.838 6.838 14 C -0.418 4.418 15 C -0.092 4.092 16 C -0.085 4.085 17 C -0.126 4.126 18 C -0.096 4.096 19 C -0.151 4.151 20 C 0.101 3.899 21 F -0.132 7.132 22 H 0.263 0.737 23 H 0.019 0.981 24 H 0.009 0.991 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.699 -13.969 3.776 26.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.577 4.577 12 S 1.437 4.563 13 O -0.834 6.834 14 C -0.551 4.551 15 C -0.094 4.094 16 C -0.104 4.104 17 C -0.144 4.144 18 C -0.115 4.115 19 C -0.170 4.170 20 C 0.080 3.920 21 F -0.111 7.111 22 H 0.073 0.927 23 H 0.038 0.962 24 H 0.028 0.972 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 22.020 -14.659 3.798 26.725 hybrid contribution 1.052 2.346 -1.689 3.077 sum 23.073 -12.313 2.108 26.237 Atomic orbital electron populations 1.69915 1.06284 1.26893 1.51102 1.25036 0.94741 0.99164 0.94570 0.86772 0.80358 0.83645 0.78460 1.20418 1.21303 1.18992 1.21165 0.89458 0.94610 1.50855 0.90867 1.19570 0.97103 0.91658 0.96354 1.21135 0.88112 1.01210 1.01990 1.27724 1.06065 1.16795 1.07147 1.70953 0.83987 0.89026 1.12370 1.93107 1.74668 1.64690 1.50888 1.26756 1.21645 0.98104 1.08620 1.19201 1.01763 0.95950 0.92522 1.21028 0.96820 0.95299 0.97236 1.21209 0.99354 0.95181 0.98634 1.21031 0.99017 0.99916 0.91543 1.21153 1.01542 0.94270 1.00030 1.17483 1.00967 0.92725 0.80789 1.91505 1.91238 1.82854 1.45453 0.92711 0.96249 0.97236 0.92209 0.91436 0.86721 0.90014 0.85376 0.88247 0.85200 0.85237 0.84947 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.20 4.04 -27.88 -0.11 -0.31 16 10 C -0.09 -1.70 5.16 -26.73 -0.14 -1.84 16 11 C -0.44 -6.61 5.92 37.16 0.22 -6.38 16 12 S 1.24 16.10 13.14 -107.50 -1.41 14.69 16 13 O -0.84 -15.78 18.14 -35.23 -0.64 -16.42 16 14 C -0.42 -4.46 5.87 36.00 0.21 -4.25 16 15 C -0.09 -1.02 5.15 -104.56 -0.54 -1.56 16 16 C -0.08 -0.91 9.70 -39.59 -0.38 -1.30 16 17 C -0.13 -1.09 10.04 -39.58 -0.40 -1.49 16 18 C -0.10 -0.73 10.04 -39.60 -0.40 -1.13 16 19 C -0.15 -1.26 10.03 -39.51 -0.40 -1.66 16 20 C 0.10 1.03 7.24 -39.42 -0.29 0.74 16 21 F -0.13 -1.33 16.48 2.25 0.04 -1.29 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 24 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.13 1.09 7.64 -51.92 -0.40 0.70 16 30 H 0.10 1.06 8.09 -51.92 -0.42 0.64 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 309.86 15.07 4.67 4.67 Total: -1.00 -35.96 309.86 -8.44 -44.40 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.55 Total: -3.07 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: -2.65 Total: -32.81 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.41 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.64 Total: -16.42 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Atomic # 16 Polarization: 16.10 SS G_CDS: -1.41 Total: 14.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.96 -8.44 -44.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078700817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.004 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds