Wall clock time and date at job start Mon Mar 30 2020 00:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48496 * 109.47313 * 270.00166 * 3 2 1 5 5 H 1.48506 * 109.46847 * 30.00407 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99998 * 3 2 1 7 7 C 1.37878 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00358 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99478 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46978 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47091 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.46983 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.47372 * 63.60920 * 12 11 10 14 14 C 1.81403 * 102.99920 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47315 * 179.97438 * 14 12 11 16 16 C 1.38221 * 120.01004 * 89.99401 * 15 14 12 17 17 C 1.38229 * 120.02594 * 180.02562 * 16 15 14 18 18 C 1.38263 * 120.04920 * 359.97438 * 17 16 15 19 19 C 1.38175 * 120.02891 * 0.02562 * 18 17 16 20 20 C 1.38435 * 120.01469 * 270.00061 * 15 14 12 21 21 F 1.35093 * 120.02480 * 0.02562 * 20 15 14 22 22 H 0.97002 * 120.00488 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47245 * 60.00501 * 9 7 2 24 24 H 1.09000 * 109.47196 * 300.00211 * 9 7 2 25 25 H 1.08996 * 109.47107 * 59.99947 * 10 9 7 26 26 H 1.09000 * 109.46946 * 299.99894 * 10 9 7 27 27 H 1.08996 * 109.47366 * 59.99888 * 11 10 9 28 28 H 1.09000 * 109.46961 * 299.99667 * 11 10 9 29 29 H 1.09001 * 109.47039 * 59.99563 * 14 12 11 30 30 H 1.08999 * 109.47064 * 299.99497 * 14 12 11 31 31 H 1.08002 * 119.98827 * 0.02562 * 16 15 14 32 32 H 1.08000 * 119.97486 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.99008 * 180.02562 * 18 17 16 34 34 H 1.08001 * 120.01835 * 179.74986 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 16 6.1562 -4.3468 -0.0005 13 8 5.7527 -4.9915 -1.2008 14 6 7.9586 -4.1423 -0.0011 15 6 8.6180 -5.4974 -0.0011 16 6 8.9199 -6.1194 -1.1979 17 6 9.5242 -7.3626 -1.1983 18 6 9.8278 -7.9851 -0.0016 19 6 9.5269 -7.3653 1.1961 20 6 8.9213 -6.1199 1.1977 21 9 8.6261 -5.5132 2.3680 22 1 -0.4851 0.8400 0.0004 23 1 3.8751 -0.6797 0.8894 24 1 3.8745 -0.6808 -0.8905 25 1 3.6578 -3.1505 -0.8896 26 1 3.6585 -3.1501 0.8903 27 1 5.9148 -2.1226 0.8900 28 1 5.9148 -2.1228 -0.8899 29 1 8.2621 -3.5910 0.8888 30 1 8.2614 -3.5907 -0.8912 31 1 8.6836 -5.6338 -2.1333 32 1 9.7601 -7.8476 -2.1339 33 1 10.3003 -8.9563 -0.0030 34 1 9.7604 -7.8536 2.1307 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078700817.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:28 Heat of formation + Delta-G solvation = -97.199018 kcal Electronic energy + Delta-G solvation = -17445.248247 eV Core-core repulsion = 14382.759032 eV Total energy + Delta-G solvation = -3062.489215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.82674 -39.96128 -36.85892 -36.35837 -34.16104 -33.92548 -31.47577 -29.96802 -28.19515 -25.12006 -23.76569 -22.75810 -21.89607 -19.04971 -18.57132 -18.37793 -17.41354 -16.95767 -16.82012 -16.45077 -16.32369 -15.91759 -15.48773 -15.05080 -14.85566 -14.75411 -14.21416 -14.11788 -13.91743 -13.53643 -13.30478 -13.13455 -12.82085 -12.54824 -12.47706 -12.21968 -12.01287 -11.81164 -11.57040 -11.37540 -11.12658 -10.78818 -9.95498 -9.66391 -9.10266 -8.31113 -6.36174 -0.06399 0.21418 0.72072 1.34626 1.36396 1.48903 1.67890 2.34871 2.64028 2.77630 3.03929 3.27395 3.51498 3.74616 3.99726 4.02281 4.12495 4.19743 4.38618 4.46721 4.54037 4.60413 4.76936 4.94474 4.98904 5.05549 5.08796 5.17513 5.34625 5.43169 5.45482 5.52182 5.63847 5.93268 6.26055 6.72008 7.28460 8.86001 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043335 B = 0.003423 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.968638 B = 8178.851895 C = 8337.998881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.237 1.237 7 C -0.540 4.540 8 H 0.030 0.970 9 C -0.008 4.008 10 C -0.087 4.087 11 C -0.438 4.438 12 S 1.275 4.725 13 O -0.903 6.903 14 C -0.405 4.405 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.130 4.130 18 C -0.089 4.089 19 C -0.152 4.152 20 C 0.089 3.911 21 F -0.133 7.133 22 H 0.267 0.733 23 H 0.038 0.962 24 H 0.009 0.991 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.152 0.848 28 H 0.076 0.924 29 H 0.157 0.843 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.030 -13.893 5.041 29.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.160 1.160 7 C -0.578 4.578 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.576 4.576 12 S 1.478 4.522 13 O -0.898 6.898 14 C -0.541 4.541 15 C -0.119 4.119 16 C -0.128 4.128 17 C -0.148 4.148 18 C -0.108 4.108 19 C -0.170 4.170 20 C 0.069 3.931 21 F -0.112 7.112 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.170 0.830 28 H 0.095 0.905 29 H 0.174 0.826 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.184 0.816 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 25.329 -14.592 5.063 29.667 hybrid contribution 0.076 2.164 -2.076 3.000 sum 25.404 -12.428 2.987 28.438 Atomic orbital electron populations 1.70080 1.08425 1.28272 1.52556 1.26100 0.95696 1.03797 0.93988 0.85599 0.79865 0.77837 0.78980 1.19873 1.20638 1.16047 1.21568 0.92387 0.93193 1.50644 0.95195 1.19551 0.93643 0.94559 0.96915 1.20997 0.91825 0.98447 1.01265 1.27669 1.02353 1.18791 1.08741 1.70232 0.85220 0.86638 1.10144 1.93005 1.77472 1.66395 1.52976 1.26582 1.18478 0.98909 1.10113 1.19288 1.03109 0.96284 0.93170 1.21168 0.98124 0.96569 0.96938 1.21530 0.98583 0.94466 1.00257 1.21456 0.97737 1.00886 0.90671 1.21539 1.00408 0.93537 1.01521 1.17659 1.01545 0.93493 0.80410 1.91499 1.91335 1.82989 1.45348 0.92428 0.94371 0.97245 0.95240 0.90198 0.83019 0.90507 0.82561 0.88176 0.86239 0.83289 0.81617 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.85 16 2 C 0.00 0.04 5.47 84.65 0.46 0.51 16 3 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 7 C -0.54 -32.16 9.66 25.60 0.25 -31.91 16 8 H 0.03 1.96 7.99 -2.92 -0.02 1.94 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.09 -3.45 5.16 30.59 0.16 -3.29 16 11 C -0.44 -12.45 5.92 71.98 0.43 -12.02 16 12 S 1.27 32.28 13.14 -56.49 -0.74 31.53 16 13 O -0.90 -34.83 18.14 -148.98 -2.70 -37.54 16 14 C -0.40 -7.91 5.87 71.23 0.42 -7.49 16 15 C -0.12 -2.41 5.15 -19.82 -0.10 -2.52 16 16 C -0.11 -2.26 9.70 22.26 0.22 -2.04 16 17 C -0.13 -2.01 10.04 22.27 0.22 -1.78 16 18 C -0.09 -1.07 10.04 22.26 0.22 -0.84 16 19 C -0.15 -2.07 10.03 22.31 0.22 -1.85 16 20 C 0.09 1.63 7.24 22.38 0.16 1.79 16 21 F -0.13 -2.36 16.48 44.97 0.74 -1.62 16 22 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 23 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 24 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.15 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.16 2.16 7.64 -2.39 -0.02 2.14 16 30 H 0.10 1.98 8.09 -2.39 -0.02 1.96 16 31 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -81.01 309.86 3.29 -77.72 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 1.03 Total: 5.93 kcal Atomic # 6 Polarization: -64.50 SS G_CDS: 2.78 Total: -61.72 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.30 Total: -60.85 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.70 Total: -37.54 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.74 Total: -1.62 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 16 Polarization: 32.28 SS G_CDS: -0.74 Total: 31.53 kcal Total: -81.01 3.29 -77.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078700817.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.478 kcal (2) G-P(sol) polarization free energy of solvation -81.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds