Wall clock time and date at job start Mon Mar 30 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42100 * 109.46600 * 296.38822 * 12 11 10 14 14 C 1.81397 * 103.00143 * 180.02562 * 12 11 10 15 15 C 1.50695 * 109.47452 * 180.02562 * 14 12 11 16 16 C 1.38269 * 119.98332 * 269.72631 * 15 14 12 17 17 C 1.38234 * 120.04717 * 179.72182 * 16 15 14 18 18 C 1.38216 * 120.02177 * 0.54958 * 17 16 15 19 19 C 1.38436 * 119.97990 * 359.72464 * 18 17 16 20 20 F 1.35099 * 120.02974 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98848 * 89.99740 * 15 14 12 22 22 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.09007 * 109.46846 * 299.99983 * 14 12 11 30 30 H 1.09007 * 109.47453 * 59.99610 * 14 12 11 31 31 H 1.07992 * 119.97731 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.98355 * 180.26989 * 17 16 15 33 33 H 1.08005 * 120.00826 * 179.74215 * 18 17 16 34 34 H 1.08002 * 120.01342 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 16 6.1562 -4.3469 0.0010 13 8 5.7536 -4.9908 1.2021 14 6 7.9586 -4.1425 0.0002 15 6 8.6179 -5.4976 0.0002 16 6 8.9259 -6.1162 1.1979 17 6 9.5254 -7.3617 1.1995 18 6 9.8280 -7.9851 0.0035 19 6 9.5253 -7.3642 -1.1962 20 9 9.8201 -7.9728 -2.3657 21 6 8.9195 -6.1189 -1.1965 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8880 26 1 3.6586 -3.1495 0.8919 27 1 5.9142 -2.1238 -0.8908 28 1 5.9156 -2.1217 0.8892 29 1 8.2614 -3.5915 -0.8903 30 1 8.2622 -3.5903 0.8897 31 1 8.6942 -5.6277 2.1327 32 1 9.7616 -7.8459 2.1355 33 1 10.3002 -8.9564 0.0050 34 1 8.6824 -5.6338 -2.1319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078703692.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:58 Heat of formation + Delta-G solvation = -75.245244 kcal Electronic energy + Delta-G solvation = -17195.340241 eV Core-core repulsion = 14133.803014 eV Total energy + Delta-G solvation = -3061.537227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.13329 -39.36471 -35.59348 -34.59516 -33.10260 -32.10433 -30.82324 -28.22971 -27.42519 -23.38113 -23.01676 -21.95279 -20.22437 -17.78980 -17.26383 -16.72708 -16.63556 -16.43514 -15.89161 -15.36654 -15.01272 -14.68066 -14.31110 -14.09648 -13.85687 -13.41615 -13.12534 -12.78014 -12.53654 -12.22348 -12.14117 -11.96329 -11.62481 -11.40264 -11.19116 -10.86875 -10.64913 -9.99673 -9.83449 -9.72217 -9.23645 -9.13775 -8.86942 -8.56266 -8.08046 -6.06339 -4.04763 0.72116 0.89922 1.65488 2.68164 3.27647 3.33532 3.35535 3.38621 3.76741 3.98219 4.32516 4.42593 4.44213 4.72402 4.89820 4.95415 5.11719 5.26014 5.30610 5.31923 5.42382 5.61816 5.76717 5.79558 6.00611 6.02007 6.16921 6.33451 6.46466 6.59290 6.80369 7.22408 7.35720 7.75894 8.51297 8.98735 9.55721 11.07166 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044564 B = 0.003131 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.160716 B = 8940.798899 C = 9008.626161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.440 4.440 12 S 1.239 4.761 13 O -0.837 6.837 14 C -0.421 4.421 15 C -0.030 4.030 16 C -0.123 4.123 17 C -0.086 4.086 18 C -0.160 4.160 19 C 0.101 3.899 20 F -0.139 7.139 21 C -0.152 4.152 22 H 0.263 0.737 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.090 -12.746 -3.695 25.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.578 4.578 12 S 1.439 4.561 13 O -0.832 6.832 14 C -0.554 4.554 15 C -0.031 4.031 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.179 4.179 19 C 0.082 3.918 20 F -0.118 7.118 21 C -0.172 4.172 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.147 0.853 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.435 -13.486 -3.708 25.595 hybrid contribution 1.151 2.109 1.653 2.916 sum 22.586 -11.377 -2.055 25.373 Atomic orbital electron populations 1.69918 1.06290 1.26903 1.51051 1.25038 0.94743 0.99174 0.94564 0.86768 0.80304 0.83640 0.78498 1.20174 1.21375 1.19181 1.21165 0.89464 0.94608 1.50904 0.90875 1.19567 0.97105 0.91661 0.96343 1.21135 0.88143 1.01205 1.01992 1.27740 1.06061 1.16902 1.07146 1.70858 0.83939 0.88859 1.12465 1.93126 1.74705 1.64710 1.50704 1.26871 1.21715 0.98245 1.08546 1.18966 0.97075 0.94395 0.92686 1.21201 0.99103 0.95831 0.98081 1.20998 0.97087 0.94573 0.97714 1.21159 1.03839 1.01554 0.91368 1.17636 1.00381 0.92485 0.81322 1.91508 1.91314 1.82815 1.46145 1.21053 1.02096 0.94701 0.99339 0.92700 0.96803 0.96711 0.91472 0.92184 0.86751 0.90005 0.85307 0.88360 0.85472 0.84891 0.84737 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.09 -1.65 5.16 -26.73 -0.14 -1.79 16 11 C -0.44 -6.20 5.92 37.16 0.22 -5.98 16 12 S 1.24 14.54 13.14 -107.50 -1.41 13.12 16 13 O -0.84 -15.13 18.14 -35.23 -0.64 -15.77 16 14 C -0.42 -3.82 6.05 36.00 0.22 -3.61 16 15 C -0.03 -0.30 5.14 -104.64 -0.54 -0.84 16 16 C -0.12 -1.29 9.70 -39.57 -0.38 -1.67 16 17 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 18 C -0.16 -1.40 10.03 -39.52 -0.40 -1.80 16 19 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 20 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 21 C -0.15 -1.36 9.68 -39.51 -0.38 -1.75 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 24 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.11 1.27 8.14 -51.92 -0.42 0.85 16 28 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 29 H 0.13 0.77 8.08 -51.92 -0.42 0.35 16 30 H 0.10 0.94 8.08 -51.92 -0.42 0.52 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -36.14 310.96 -8.43 -44.56 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.57 Total: -3.36 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -2.63 Total: -31.67 kcal Atomic # 7 Polarization: -27.95 SS G_CDS: 0.77 Total: -27.18 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.64 Total: -15.77 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 14.54 SS G_CDS: -1.41 Total: 13.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -36.14 -8.43 -44.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078703692.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.683 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds