Wall clock time and date at job start Mon Mar 30 2020 00:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42100 * 109.46600 * 296.38822 * 12 11 10 14 14 C 1.81397 * 103.00143 * 180.02562 * 12 11 10 15 15 C 1.50695 * 109.47452 * 180.02562 * 14 12 11 16 16 C 1.38269 * 119.98332 * 269.72631 * 15 14 12 17 17 C 1.38234 * 120.04717 * 179.72182 * 16 15 14 18 18 C 1.38216 * 120.02177 * 0.54958 * 17 16 15 19 19 C 1.38436 * 119.97990 * 359.72464 * 18 17 16 20 20 F 1.35099 * 120.02974 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98848 * 89.99740 * 15 14 12 22 22 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 24 24 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 25 25 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 26 26 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 28 28 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 29 29 H 1.09007 * 109.46846 * 299.99983 * 14 12 11 30 30 H 1.09007 * 109.47453 * 59.99610 * 14 12 11 31 31 H 1.07992 * 119.97731 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.98355 * 180.26989 * 17 16 15 33 33 H 1.08005 * 120.00826 * 179.74215 * 18 17 16 34 34 H 1.08002 * 120.01342 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 16 6.1562 -4.3469 0.0010 13 8 5.7536 -4.9908 1.2021 14 6 7.9586 -4.1425 0.0002 15 6 8.6179 -5.4976 0.0002 16 6 8.9259 -6.1162 1.1979 17 6 9.5254 -7.3617 1.1995 18 6 9.8280 -7.9851 0.0035 19 6 9.5253 -7.3642 -1.1962 20 9 9.8201 -7.9728 -2.3657 21 6 8.9195 -6.1189 -1.1965 22 1 -0.4849 0.8401 -0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8746 -0.6808 -0.8905 25 1 3.6579 -3.1513 -0.8880 26 1 3.6586 -3.1495 0.8919 27 1 5.9142 -2.1238 -0.8908 28 1 5.9156 -2.1217 0.8892 29 1 8.2614 -3.5915 -0.8903 30 1 8.2622 -3.5903 0.8897 31 1 8.6942 -5.6277 2.1327 32 1 9.7616 -7.8459 2.1355 33 1 10.3002 -8.9564 0.0050 34 1 8.6824 -5.6338 -2.1319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078703692.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:58 Heat of formation + Delta-G solvation = -99.329633 kcal Electronic energy + Delta-G solvation = -17196.384618 eV Core-core repulsion = 14133.803014 eV Total energy + Delta-G solvation = -3062.581605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85681 -40.05287 -36.81169 -36.32536 -34.13639 -33.80897 -31.50964 -29.93395 -28.24164 -25.09467 -23.71392 -22.80299 -21.87142 -19.04023 -18.50947 -18.10259 -17.35937 -17.12807 -16.74916 -16.49629 -16.30758 -16.02075 -15.58394 -15.07738 -14.82685 -14.68911 -14.19341 -14.13608 -13.90752 -13.40233 -13.28400 -13.00179 -12.78743 -12.62712 -12.50442 -12.13550 -12.05973 -11.81195 -11.53164 -11.35844 -11.06279 -10.76749 -9.90938 -9.71774 -9.06925 -8.29957 -6.34950 -0.05302 0.20434 0.76670 1.35201 1.38564 1.49972 1.75431 2.36104 2.62317 2.84407 3.05240 3.24509 3.60683 3.79922 4.04847 4.12054 4.16257 4.19127 4.29255 4.46872 4.57731 4.65639 4.81696 4.97375 5.03027 5.06559 5.09979 5.13527 5.30951 5.46559 5.47129 5.55008 5.65890 5.91376 6.27496 6.73679 7.29858 8.87221 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044564 B = 0.003131 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.160716 B = 8940.798899 C = 9008.626161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.540 4.540 8 H 0.029 0.971 9 C -0.008 4.008 10 C -0.088 4.088 11 C -0.440 4.440 12 S 1.283 4.717 13 O -0.908 6.908 14 C -0.406 4.406 15 C -0.047 4.047 16 C -0.145 4.145 17 C -0.091 4.091 18 C -0.160 4.160 19 C 0.085 3.915 20 F -0.143 7.143 21 C -0.148 4.148 22 H 0.266 0.734 23 H 0.009 0.991 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.026 0.974 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.173 0.827 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.171 -11.839 -5.147 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.173 1.173 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.577 4.577 12 S 1.486 4.514 13 O -0.904 6.904 14 C -0.542 4.542 15 C -0.048 4.048 16 C -0.164 4.164 17 C -0.109 4.109 18 C -0.179 4.179 19 C 0.066 3.934 20 F -0.122 7.122 21 C -0.167 4.167 22 H 0.075 0.925 23 H 0.027 0.973 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.045 0.955 27 H 0.174 0.826 28 H 0.092 0.908 29 H 0.191 0.809 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 24.490 -12.589 -5.159 28.015 hybrid contribution 0.242 1.686 2.100 2.704 sum 24.732 -10.902 -3.059 27.201 Atomic orbital electron populations 1.70089 1.08466 1.28242 1.52644 1.26116 0.95686 1.03854 0.94018 0.85571 0.79178 0.77687 0.79659 1.18052 1.21350 1.17288 1.21590 0.92504 0.93136 1.50556 0.95266 1.19553 0.93520 0.94732 0.96891 1.20997 0.92185 0.98254 1.01194 1.27695 1.02050 1.19128 1.08824 1.70067 0.85247 0.86096 1.09967 1.93019 1.77790 1.66575 1.53009 1.26725 1.18118 0.98577 1.10741 1.19087 0.97941 0.94905 0.92902 1.21398 0.99983 0.96760 0.98263 1.21240 0.96692 0.94192 0.98782 1.21437 1.03173 1.02248 0.91058 1.17871 1.01028 0.93078 0.81431 1.91499 1.91421 1.82930 1.46341 1.21343 1.00909 0.94366 1.00107 0.92474 0.97255 0.94401 0.90099 0.95499 0.82600 0.90783 0.80938 0.88522 0.86352 0.83001 0.82870 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 2 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 3 Si 0.96 44.01 27.47 68.60 1.88 45.90 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.54 -31.67 9.66 25.60 0.25 -31.43 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.33 5.16 30.59 0.16 -3.17 16 11 C -0.44 -11.28 5.92 71.98 0.43 -10.85 16 12 S 1.28 27.91 13.14 -56.49 -0.74 27.17 16 13 O -0.91 -33.22 18.14 -148.98 -2.70 -35.92 16 14 C -0.41 -6.03 6.05 71.23 0.43 -5.60 16 15 C -0.05 -0.83 5.14 -19.87 -0.10 -0.93 16 16 C -0.14 -2.87 9.70 22.28 0.22 -2.66 16 17 C -0.09 -1.50 10.04 22.26 0.22 -1.27 16 18 C -0.16 -2.50 10.03 22.31 0.22 -2.28 16 19 C 0.09 1.45 7.30 22.38 0.16 1.61 16 20 F -0.14 -2.58 17.27 44.97 0.78 -1.81 16 21 C -0.15 -2.21 9.68 22.31 0.22 -1.99 16 22 H 0.27 15.74 8.31 -92.71 -0.77 14.96 16 23 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 24 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 25 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.17 1.09 8.08 -2.39 -0.02 1.07 16 30 H 0.10 1.57 8.08 -2.39 -0.02 1.56 16 31 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -82.13 310.96 3.33 -78.80 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.03 Total: 4.65 kcal Atomic # 6 Polarization: -61.18 SS G_CDS: 2.79 Total: -58.39 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: 0.30 Total: -60.40 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -2.70 Total: -35.92 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Atomic # 16 Polarization: 27.91 SS G_CDS: -0.74 Total: 27.17 kcal Total: -82.13 3.33 -78.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078703692.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.527 kcal (2) G-P(sol) polarization free energy of solvation -82.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds