Wall clock time and date at job start Mon Mar 30 2020 00:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00055 * 2 1 4 4 H 1.48506 * 109.46792 * 269.99966 * 3 2 1 5 5 H 1.48503 * 109.47395 * 29.99546 * 3 2 1 6 6 H 1.48492 * 109.47432 * 149.99949 * 3 2 1 7 7 C 1.37879 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99875 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00064 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47311 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47354 * 180.02562 * 10 9 7 12 12 S 1.81402 * 109.46824 * 179.97438 * 11 10 9 13 13 O 1.42100 * 109.47005 * 63.61452 * 12 11 10 14 14 C 1.81402 * 102.99789 * 179.97438 * 12 11 10 15 15 C 1.50695 * 109.47210 * 180.02562 * 14 12 11 16 16 C 1.38266 * 119.98923 * 269.95907 * 15 14 12 17 17 C 1.38226 * 120.05404 * 180.02562 * 16 15 14 18 18 C 1.38217 * 120.02522 * 0.03782 * 17 16 15 19 19 C 1.38434 * 119.97400 * 359.97438 * 18 17 16 20 20 F 1.35099 * 120.02897 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98906 * 90.00409 * 15 14 12 22 22 H 0.96998 * 120.00421 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47372 * 60.00286 * 9 7 2 24 24 H 1.08996 * 109.47680 * 299.99967 * 9 7 2 25 25 H 1.08997 * 109.47184 * 59.99717 * 10 9 7 26 26 H 1.09004 * 109.46720 * 300.00367 * 10 9 7 27 27 H 1.08997 * 109.47136 * 60.00537 * 11 10 9 28 28 H 1.09000 * 109.46903 * 299.99555 * 11 10 9 29 29 H 1.09000 * 109.46985 * 60.00176 * 14 12 11 30 30 H 1.09001 * 109.47424 * 300.00471 * 14 12 11 31 31 H 1.08000 * 119.97183 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.98497 * 180.02562 * 17 16 15 33 33 H 1.08003 * 120.01075 * 180.02562 * 18 17 16 34 34 H 1.07996 * 120.01219 * 0.24814 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5114 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 6 5.5515 -2.6365 0.0014 12 16 6.1561 -4.3468 0.0039 13 8 5.7527 -4.9935 -1.1954 14 6 7.9586 -4.1424 0.0028 15 6 8.6178 -5.4975 0.0041 16 6 8.9215 -6.1172 1.2022 17 6 9.5267 -7.3599 1.2049 18 6 9.8297 -7.9842 0.0095 19 6 9.5264 -7.3646 -1.1907 20 9 9.8217 -7.9740 -2.3597 21 6 8.9195 -6.1198 -1.1921 22 1 -0.4851 0.8400 -0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8745 -0.6808 -0.8905 25 1 3.6579 -3.1514 -0.8878 26 1 3.6585 -3.1493 0.8921 27 1 5.9148 -2.1219 0.8909 28 1 5.9148 -2.1236 -0.8891 29 1 8.2620 -3.5895 0.8919 30 1 8.2614 -3.5922 -0.8881 31 1 8.6863 -5.6295 2.1367 32 1 9.7630 -7.8432 2.1414 33 1 10.3022 -8.9554 0.0119 34 1 8.6866 -5.6335 -2.1279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078703696.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:00 Heat of formation + Delta-G solvation = -100.829323 kcal Electronic energy + Delta-G solvation = -17212.259554 eV Core-core repulsion = 14149.612918 eV Total energy + Delta-G solvation = -3062.646636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.97266 -40.03364 -36.83567 -36.32776 -34.13827 -33.78864 -31.51115 -29.93600 -28.23204 -25.09646 -23.71703 -22.78272 -21.87230 -19.03986 -18.49785 -18.16765 -17.40939 -17.09191 -16.79847 -16.56004 -16.33632 -16.02186 -15.60686 -15.01817 -14.80995 -14.73153 -14.25546 -14.14219 -13.88943 -13.43624 -13.25708 -13.02547 -12.77437 -12.58310 -12.44352 -12.18144 -12.05595 -11.79317 -11.54037 -11.35095 -11.06258 -10.77756 -9.96271 -9.66555 -9.08955 -8.29974 -6.35015 -0.03229 0.19764 0.78318 1.35878 1.37452 1.49936 1.75616 2.35967 2.65341 2.86141 3.05291 3.20683 3.61873 3.80381 4.04254 4.09223 4.17057 4.23497 4.31129 4.45972 4.57734 4.72717 4.81336 4.99070 5.03316 5.09670 5.11044 5.16717 5.39259 5.46904 5.47536 5.55224 5.65763 5.95104 6.27463 6.73624 7.29726 8.87174 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046463 B = 0.003142 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.487161 B = 8910.395974 C = 9024.602333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.234 1.234 7 C -0.540 4.540 8 H 0.029 0.971 9 C -0.009 4.009 10 C -0.088 4.088 11 C -0.440 4.440 12 S 1.289 4.711 13 O -0.915 6.915 14 C -0.406 4.406 15 C -0.049 4.049 16 C -0.115 4.115 17 C -0.080 4.080 18 C -0.159 4.159 19 C 0.068 3.932 20 F -0.157 7.157 21 C -0.179 4.179 22 H 0.266 0.734 23 H 0.041 0.959 24 H 0.007 0.993 25 H 0.023 0.977 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.071 0.929 29 H 0.182 0.818 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.177 0.823 33 H 0.154 0.846 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.287 -11.891 9.420 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.157 1.157 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.577 4.577 12 S 1.492 4.508 13 O -0.911 6.911 14 C -0.542 4.542 15 C -0.050 4.050 16 C -0.134 4.134 17 C -0.098 4.098 18 C -0.179 4.179 19 C 0.049 3.951 20 F -0.136 7.136 21 C -0.199 4.199 22 H 0.075 0.925 23 H 0.059 0.941 24 H 0.025 0.975 25 H 0.042 0.958 26 H 0.101 0.899 27 H 0.177 0.823 28 H 0.090 0.910 29 H 0.200 0.800 30 H 0.105 0.895 31 H 0.202 0.798 32 H 0.195 0.805 33 H 0.171 0.829 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 24.608 -12.641 9.339 29.199 hybrid contribution 0.200 1.716 -3.162 3.603 sum 24.808 -10.924 6.178 27.802 Atomic orbital electron populations 1.70082 1.08482 1.28252 1.52634 1.26114 0.95686 1.03852 0.94025 0.85596 0.79989 0.77787 0.78877 1.20153 1.20722 1.15679 1.21591 0.92522 0.93121 1.50539 0.95282 1.19557 0.93500 0.94727 0.96922 1.21003 0.92177 0.98273 1.01192 1.27699 1.02065 1.19104 1.08845 1.69833 0.85174 0.85958 1.09863 1.93025 1.77956 1.66761 1.53345 1.26760 1.18094 0.98654 1.10674 1.19177 0.98026 0.94873 0.92966 1.21744 0.97817 0.95570 0.98235 1.21560 0.95439 0.94500 0.98274 1.21533 1.03150 1.02254 0.90913 1.18053 1.02042 0.92903 0.82077 1.91450 1.91622 1.83000 1.47530 1.21181 1.03039 0.95789 0.99923 0.92473 0.94063 0.97504 0.95759 0.89863 0.82281 0.91023 0.80033 0.89489 0.79783 0.80527 0.82878 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 3 Si 0.95 43.96 27.47 68.60 1.88 45.85 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.23 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.54 -31.66 9.66 25.60 0.25 -31.41 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.33 5.16 30.59 0.16 -3.18 16 11 C -0.44 -11.26 5.92 71.98 0.43 -10.84 16 12 S 1.29 28.08 13.14 -56.49 -0.74 27.33 16 13 O -0.92 -34.88 18.14 -148.98 -2.70 -37.58 16 14 C -0.41 -6.05 6.05 71.23 0.43 -5.62 16 15 C -0.05 -0.86 5.14 -19.87 -0.10 -0.96 16 16 C -0.11 -1.17 9.70 22.27 0.22 -0.95 16 17 C -0.08 -0.78 10.04 22.26 0.22 -0.55 16 18 C -0.16 -2.45 10.03 22.31 0.22 -2.23 16 19 C 0.07 1.58 7.30 22.38 0.16 1.74 16 20 F -0.16 -4.16 17.27 44.97 0.78 -3.39 16 21 C -0.18 -4.38 9.68 22.31 0.22 -4.16 16 22 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 23 H 0.04 1.72 7.20 -2.39 -0.02 1.71 16 24 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 27 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.18 0.86 8.09 -2.39 -0.02 0.84 16 30 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 31 H 0.18 0.19 8.06 -2.91 -0.02 0.16 16 32 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 33 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.11 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -87.45 310.96 3.33 -84.12 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.03 Total: 2.12 kcal Atomic # 6 Polarization: -60.77 SS G_CDS: 2.79 Total: -57.99 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.30 Total: -60.46 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -2.70 Total: -37.58 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 16 Polarization: 28.08 SS G_CDS: -0.74 Total: 27.33 kcal Total: -87.45 3.33 -84.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078703696.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.708 kcal (2) G-P(sol) polarization free energy of solvation -87.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds