Wall clock time and date at job start Mon Mar 30 2020 00:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00068 * 2 1 4 4 H 1.48496 * 109.47185 * 270.00424 * 3 2 1 5 5 H 1.48499 * 109.47047 * 30.00352 * 3 2 1 6 6 H 1.48496 * 109.47254 * 150.00251 * 3 2 1 7 7 C 1.37876 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99885 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00067 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47174 * 177.23150 * 9 7 2 11 11 C 1.46900 * 111.00204 * 172.03902 * 10 9 7 12 12 C 1.53009 * 109.46728 * 286.09258 * 11 10 9 13 13 O 1.42898 * 109.47216 * 67.70078 * 12 11 10 14 14 C 1.46901 * 110.99765 * 295.98891 * 10 9 7 15 15 C 1.50697 * 109.47224 * 170.00417 * 14 10 9 16 16 C 1.38607 * 120.43096 * 104.97586 * 15 14 10 17 17 C 1.38662 * 118.44209 * 180.02562 * 16 15 14 18 18 C 1.38196 * 119.19075 * 0.02562 * 17 16 15 19 19 N 1.31880 * 120.77787 * 359.97438 * 18 17 16 20 20 C 1.31976 * 121.71065 * 359.97438 * 19 18 17 21 21 Cl 1.73593 * 119.63484 * 180.02562 * 20 19 18 22 22 H 0.96998 * 120.00132 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47273 * 57.22815 * 9 7 2 24 24 H 1.08996 * 109.46956 * 297.22666 * 9 7 2 25 25 H 1.09000 * 109.47213 * 46.08694 * 11 10 9 26 26 H 1.08990 * 109.47427 * 166.09284 * 11 10 9 27 27 H 1.08997 * 109.47000 * 187.70197 * 12 11 10 28 28 H 1.09000 * 109.46648 * 307.70553 * 12 11 10 29 29 H 0.96695 * 114.00417 * 179.97438 * 13 12 11 30 30 H 1.08995 * 109.47574 * 49.99973 * 14 10 9 31 31 H 1.09000 * 109.47186 * 290.00112 * 14 10 9 32 32 H 1.08001 * 120.77975 * 0.04566 * 16 15 14 33 33 H 1.08001 * 120.40906 * 180.02562 * 17 16 15 34 34 H 1.07993 * 119.61145 * 180.26009 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5775 0.0653 11 6 5.4572 -2.6302 -0.1229 12 6 5.7904 -2.3806 -1.5952 13 8 5.4694 -1.0299 -1.9339 14 6 3.6106 -3.2140 1.3303 15 6 3.9104 -4.6894 1.2638 16 6 4.9970 -5.2163 1.9441 17 6 5.2348 -6.5794 1.8540 18 6 4.3872 -7.3627 1.0938 19 7 3.3622 -6.8281 0.4592 20 6 3.1044 -5.5353 0.5228 21 17 1.7398 -4.8890 -0.3337 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6380 0.8629 24 1 3.8745 -0.7237 -0.9149 25 1 5.9309 -1.8647 0.4916 26 1 5.8263 -3.6125 0.1716 27 1 6.8536 -2.5540 -1.7616 28 1 5.2094 -3.0595 -2.2194 29 1 5.6556 -0.8004 -2.8546 30 1 2.5434 -3.0672 1.4966 31 1 4.1711 -2.7660 2.1508 32 1 5.6430 -4.5802 2.5310 33 1 6.0722 -7.0236 2.3715 34 1 4.5637 -8.4257 1.0223 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081640847.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:13 Heat of formation + Delta-G solvation = -34.250698 kcal Electronic energy + Delta-G solvation = -18904.386679 eV Core-core repulsion = 15862.503363 eV Total energy + Delta-G solvation = -3041.883315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27891 -39.00120 -37.36668 -36.93973 -34.69622 -33.65520 -32.32775 -30.90921 -28.86867 -26.39105 -24.54399 -23.62372 -23.18275 -21.36007 -18.97883 -18.30041 -18.19657 -17.60521 -16.92158 -16.60221 -15.89123 -15.73303 -15.43634 -14.94850 -14.78320 -14.39808 -14.11993 -14.03513 -13.51118 -13.48528 -13.08619 -12.66974 -12.52940 -12.35812 -12.29009 -11.96292 -11.80838 -11.67304 -11.21231 -10.84544 -10.75480 -10.54336 -10.46310 -9.74446 -8.94379 -8.16718 -6.15292 0.00959 0.22892 1.12962 1.37459 1.38193 1.49679 2.42182 2.68212 3.16746 3.30891 3.53077 3.56026 3.81675 3.96482 4.05878 4.24370 4.34364 4.42894 4.48980 4.55771 4.71287 4.79028 4.93560 5.01733 5.07522 5.15429 5.19467 5.43148 5.63937 5.80331 6.11991 6.41825 6.76911 6.81142 6.95056 7.05442 7.46825 8.99259 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.020366 B = 0.007040 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.540818 B = 3976.147973 C = 4676.302712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.007 3.993 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.165 3.835 10 N -0.522 5.522 11 C 0.047 3.953 12 C 0.085 3.915 13 O -0.585 6.585 14 C 0.101 3.899 15 C -0.117 4.117 16 C -0.063 4.063 17 C -0.152 4.152 18 C 0.104 3.896 19 N -0.512 5.512 20 C 0.166 3.834 21 Cl -0.039 7.039 22 H 0.261 0.739 23 H -0.029 1.029 24 H 0.066 0.934 25 H 0.031 0.969 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.386 0.614 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.166 0.834 33 H 0.186 0.814 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 -12.162 2.669 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.189 4.189 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.038 3.962 10 N -0.246 5.246 11 C -0.081 4.081 12 C 0.008 3.992 13 O -0.394 6.394 14 C -0.027 4.027 15 C -0.121 4.121 16 C -0.090 4.090 17 C -0.172 4.172 18 C -0.054 4.054 19 N -0.223 5.223 20 C 0.004 3.996 21 Cl -0.010 7.010 22 H 0.070 0.930 23 H -0.011 1.011 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.236 0.764 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.184 0.816 33 H 0.203 0.797 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.827 -12.752 2.324 20.458 hybrid contribution 0.352 1.977 0.305 2.031 sum 16.179 -10.776 2.629 19.616 Atomic orbital electron populations 1.70059 1.07868 1.27414 1.54118 1.25697 0.95374 1.02507 0.95335 0.85816 0.79079 0.79705 0.78828 1.19560 1.21495 1.18259 1.21601 0.91408 0.93980 1.47553 0.91950 1.20273 0.93945 0.85535 0.96426 1.61899 1.11102 1.19007 1.32605 1.22310 0.88565 1.01033 0.96219 1.22201 0.98735 0.83036 0.95272 1.86582 1.88756 1.29734 1.34286 1.20828 1.01675 0.88821 0.91377 1.20641 0.96588 0.96277 0.98585 1.21894 0.94276 0.96753 0.96048 1.22602 1.01736 0.93255 0.99577 1.23371 0.88351 1.02100 0.91542 1.67070 1.21210 1.11680 1.22390 1.21697 0.92068 0.90265 0.95614 1.98464 1.42558 1.84075 1.75926 0.92978 1.01129 0.91680 0.95031 0.88595 0.90672 0.94100 0.76422 0.91293 0.93666 0.81649 0.79663 0.78676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.94 46.48 27.52 68.60 1.89 48.37 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.26 -12.23 6.46 99.48 0.64 -11.58 16 7 C -0.51 -29.51 8.84 25.60 0.23 -29.28 16 8 H 0.06 3.91 6.68 -2.91 -0.02 3.89 16 9 C 0.16 8.07 3.56 85.55 0.30 8.38 16 10 N -0.52 -21.20 4.35 -905.38 -3.94 -25.14 16 11 C 0.05 1.47 5.39 86.31 0.47 1.93 16 12 C 0.09 2.42 7.34 71.99 0.53 2.95 16 13 O -0.59 -18.87 10.68 -148.98 -1.59 -20.46 16 14 C 0.10 3.83 4.29 85.56 0.37 4.20 16 15 C -0.12 -3.65 4.50 -19.75 -0.09 -3.74 16 16 C -0.06 -1.32 8.79 22.46 0.20 -1.13 16 17 C -0.15 -2.37 10.11 22.36 0.23 -2.14 16 18 C 0.10 2.06 11.18 84.68 0.95 3.01 16 19 N -0.51 -15.60 10.34 -186.69 -1.93 -17.53 16 20 C 0.17 5.82 7.27 84.70 0.62 6.43 16 21 Cl -0.04 -1.62 27.03 -2.72 -0.07 -1.70 16 22 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 23 H -0.03 -1.46 7.00 -2.39 -0.02 -1.48 16 24 H 0.07 3.25 4.63 -2.39 -0.01 3.24 16 25 H 0.03 1.01 8.03 -2.39 -0.02 0.99 16 26 H 0.10 2.49 6.08 -2.39 -0.01 2.48 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.39 8.61 9.12 -74.06 -0.68 7.94 16 30 H 0.07 3.18 6.00 -2.39 -0.01 3.16 16 31 H 0.05 1.55 7.98 -2.39 -0.02 1.54 16 32 H 0.17 2.51 8.05 -2.91 -0.02 2.49 16 33 H 0.19 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -76.79 295.57 -0.71 -77.50 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.39 Total: 8.24 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 4.25 Total: -8.52 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -5.57 Total: -103.43 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.59 Total: -20.46 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.89 Total: 48.37 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.07 Total: -1.70 kcal Total: -76.79 -0.71 -77.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081640847.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.248 kcal (2) G-P(sol) polarization free energy of solvation -76.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds