Wall clock time and date at job start Mon Mar 30 2020 01:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47408 * 2 1 4 4 C 1.46494 * 120.00265 * 270.00305 * 3 2 1 5 5 C 1.50709 * 109.47166 * 269.99688 * 4 3 2 6 6 H 1.07999 * 119.99435 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99853 * 179.97438 * 5 4 3 8 8 N 1.31503 * 120.00440 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99561 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47370 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47049 * 119.99822 * 9 7 5 12 12 H 1.48502 * 109.47300 * 240.00146 * 9 7 5 13 13 C 1.34781 * 120.00012 * 89.99654 * 3 2 1 14 14 O 1.21275 * 120.00274 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99811 * 0.02562 * 13 3 2 16 16 S 1.81398 * 109.47136 * 179.97438 * 15 13 3 17 17 C 1.76199 * 103.00071 * 179.97438 * 16 15 13 18 18 C 1.39948 * 126.71801 * 180.02562 * 17 16 15 19 19 N 1.30901 * 108.24754 * 180.02562 * 18 17 16 20 20 N 1.28700 * 109.72700 * 359.97438 * 19 18 17 21 21 H 0.97003 * 125.67015 * 180.02562 * 20 19 18 22 22 N 1.31895 * 126.72032 * 359.68880 * 17 16 15 23 23 H 1.09001 * 109.47287 * 299.99842 * 1 2 3 24 24 H 1.09001 * 109.47538 * 59.99919 * 1 2 3 25 25 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47287 * 240.00158 * 2 1 3 27 27 H 1.09010 * 109.47272 * 120.00121 * 2 1 3 28 28 H 1.09001 * 109.47382 * 29.99441 * 4 3 2 29 29 H 1.08998 * 109.47652 * 150.00047 * 4 3 2 30 30 H 0.96999 * 120.00258 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46894 * 59.99918 * 15 13 3 32 32 H 1.09000 * 109.47022 * 299.99473 * 15 13 3 33 33 H 1.08001 * 125.87647 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6858 1.8350 -1.7037 6 1 4.3429 1.2309 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9131 2.0956 -3.4175 10 1 6.6008 1.2405 -2.4169 11 1 5.9201 1.4163 -4.7381 12 1 6.6210 3.3965 -3.5261 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3059 2.4724 16 16 2.3857 2.4170 3.8512 17 6 2.0363 1.4296 5.2681 18 6 2.1710 1.8113 6.6077 19 7 1.8142 0.8009 7.3596 20 7 1.4636 -0.1904 6.6175 21 1 1.1580 -1.0545 6.9351 22 7 1.5907 0.1882 5.2738 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.5817 1.6877 -2.0283 29 1 2.0956 3.1410 -1.1383 30 1 3.6749 3.5154 -4.4444 31 1 2.6227 0.4187 2.5299 32 1 0.9443 1.0115 2.5302 33 1 2.5116 2.7736 6.9605 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095411472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:28 Heat of formation + Delta-G solvation = 43.297883 kcal Electronic energy + Delta-G solvation = -17925.959650 eV Core-core repulsion = 14921.775551 eV Total energy + Delta-G solvation = -3004.184099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.28096 -40.74421 -37.05206 -34.94399 -33.69327 -32.36448 -31.88584 -31.18138 -28.59962 -24.94670 -24.53619 -24.19637 -23.39255 -20.29652 -19.44886 -18.63420 -18.05028 -17.79637 -17.03191 -16.83405 -16.50667 -16.07124 -15.82162 -14.97666 -14.77223 -14.74889 -14.46525 -13.82825 -13.54803 -13.25799 -13.05885 -12.84309 -12.67453 -12.52361 -12.18531 -12.08209 -12.03410 -11.91420 -11.68610 -11.55822 -10.82536 -10.74338 -10.63513 -9.51780 -8.70457 -8.21671 -6.35990 0.06528 0.37002 0.93957 1.29514 1.38142 1.40773 1.52029 1.65863 1.98900 2.26172 2.43276 3.08642 3.31361 3.51981 3.93801 3.95225 4.05760 4.27087 4.40637 4.60816 4.63335 4.90652 4.92933 4.96314 5.04609 5.22306 5.37357 5.56573 5.81405 6.06052 6.08886 6.62052 6.74259 6.81957 7.22075 7.38206 8.85797 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028599 B = 0.004233 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.825622 B = 6613.458986 C = 7031.190420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.594 5.594 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.516 3.484 14 O -0.577 6.577 15 C -0.133 4.133 16 S 0.057 5.943 17 C 0.009 3.991 18 C -0.015 4.015 19 N -0.232 5.232 20 N -0.308 5.308 21 H 0.479 0.521 22 N -0.298 5.298 23 H 0.058 0.942 24 H 0.042 0.958 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.026 0.974 29 H 0.001 0.999 30 H 0.267 0.733 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 -9.516 17.696 20.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.324 5.324 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.302 3.698 14 O -0.458 6.458 15 C -0.285 4.285 16 S 0.285 5.715 17 C -0.270 4.270 18 C -0.205 4.205 19 N -0.074 5.074 20 N -0.145 5.145 21 H 0.334 0.666 22 N -0.138 5.138 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.044 0.956 29 H 0.020 0.980 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.415 -8.979 17.821 20.677 hybrid contribution 0.422 -0.803 -0.805 1.213 sum -4.993 -9.783 17.017 20.254 Atomic orbital electron populations 1.22155 0.94452 1.03594 1.01786 1.21810 0.95412 0.81148 1.04156 1.48171 1.63272 1.15137 1.05861 1.18781 0.95461 0.91730 0.79901 1.21737 0.97823 1.32060 1.06547 0.92718 1.25820 1.02261 0.94462 0.96428 1.70046 1.37645 1.34212 1.14809 0.85385 0.79156 0.78011 0.78357 1.19115 1.19535 1.20785 1.20083 0.77970 0.86302 0.85428 1.90693 1.47755 1.19871 1.87453 1.23746 1.08971 1.02759 0.92977 1.86568 1.82202 1.13369 0.89340 1.25711 1.03505 0.96425 1.01308 1.24689 1.07679 1.01306 0.86825 1.73293 1.11673 0.96849 1.25546 1.48945 1.51093 1.14453 1.00024 0.66575 1.78246 1.22579 1.12424 1.00552 0.92304 0.93890 0.88628 0.90426 0.88361 0.95571 0.98046 0.92399 0.84956 0.84500 0.75989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.24 71.98 0.74 -3.12 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.59 -24.37 2.46 -826.15 -2.03 -26.40 16 4 C 0.26 13.87 5.16 85.64 0.44 14.31 16 5 C -0.54 -30.86 9.39 25.60 0.24 -30.61 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -55.55 13.29 21.44 0.28 -55.27 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.52 20.82 7.69 87.66 0.67 21.49 16 14 O -0.58 -28.94 15.44 -3.01 -0.05 -28.98 16 15 C -0.13 -3.77 4.65 71.24 0.33 -3.44 16 16 S 0.06 1.59 21.28 -56.49 -1.20 0.39 16 17 C 0.01 0.21 7.37 85.10 0.63 0.83 16 18 C -0.01 -0.30 12.01 85.25 1.02 0.73 16 19 N -0.23 -4.52 12.23 -56.94 -0.70 -5.22 16 20 N -0.31 -5.39 8.32 37.02 0.31 -5.08 16 21 H 0.48 4.68 8.96 -340.43 -3.05 1.63 16 22 N -0.30 -6.68 12.46 -54.37 -0.68 -7.36 16 23 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 24 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 27 H 0.10 2.24 6.44 -2.38 -0.02 2.22 16 28 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 29 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 30 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.13 3.27 7.40 -2.39 -0.02 3.25 16 32 H 0.14 3.22 7.19 -2.39 -0.02 3.20 16 33 H 0.22 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -73.96 305.48 1.11 -72.85 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -1.91 Total: 3.95 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.05 Total: 4.54 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -2.81 Total: -99.33 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.05 Total: -28.98 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.20 Total: 0.39 kcal Total: -73.96 1.11 -72.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095411472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.152 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds