Wall clock time and date at job start Mon Mar 30 2020 01:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00256 * 3 2 1 6 6 H 1.48508 * 109.46873 * 60.00291 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21529 * 120.00356 * 359.97438 * 13 12 11 15 15 C 1.47996 * 119.99790 * 179.97438 * 13 12 11 16 16 C 1.39990 * 120.92761 * 359.72511 * 15 13 12 17 17 C 1.37932 * 119.09256 * 179.74675 * 16 15 13 18 18 N 1.31935 * 121.01810 * 0.53370 * 17 16 15 19 19 C 1.31861 * 122.05508 * 359.71683 * 18 17 16 20 20 F 1.35102 * 119.60373 * 179.97438 * 19 18 17 21 21 C 1.38875 * 120.78662 * 0.02562 * 19 18 17 22 22 F 1.35098 * 120.55289 * 179.97438 * 21 19 18 23 23 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 26 26 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 27 27 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 28 28 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 29 29 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 30 30 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 31 31 H 1.08004 * 120.45681 * 0.02562 * 16 15 13 32 32 H 1.08001 * 119.49187 * 180.27133 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7877 -7.5934 0.0020 15 6 2.9442 -8.4963 0.0020 16 6 4.3245 -8.2629 -0.0039 17 6 5.1868 -9.3395 0.0017 18 7 4.7293 -10.5770 0.0019 19 6 3.4384 -10.8458 0.0023 20 9 3.0245 -12.1319 0.0019 21 6 2.4992 -9.8228 0.0020 22 9 1.1777 -10.1037 0.0019 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8906 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8535 -5.0445 0.8914 30 1 3.3856 -5.9235 0.0021 31 1 4.7090 -7.2537 -0.0081 32 1 6.2529 -9.1668 0.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097866507.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:17 Heat of formation + Delta-G solvation = -118.353982 kcal Electronic energy + Delta-G solvation = -19315.233341 eV Core-core repulsion = 15717.906353 eV Total energy + Delta-G solvation = -3597.326988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.75963 -49.86552 -41.69691 -40.30669 -37.08125 -35.33444 -34.22873 -32.83299 -31.86355 -28.84224 -26.51462 -24.99652 -24.52529 -22.40293 -21.98420 -19.80471 -19.23267 -18.73727 -18.43998 -17.97590 -17.75849 -16.87326 -16.81225 -16.41355 -16.31627 -15.76128 -15.71407 -15.45240 -15.19213 -14.40504 -14.24120 -14.21174 -13.81841 -13.62956 -13.55492 -12.77974 -12.54470 -12.34258 -11.85568 -11.66589 -11.44212 -11.30859 -11.19238 -10.93792 -10.54478 -10.25839 -10.16119 -8.17999 -6.29048 -0.85727 -0.55588 1.43714 1.44306 1.51477 1.56785 1.64746 2.06747 2.29820 2.43737 2.76278 3.12345 3.16680 3.31547 3.34169 3.99308 4.14336 4.21506 4.21800 4.51234 4.55798 4.56799 4.91602 4.95153 5.19366 5.22508 5.29561 5.54722 5.73193 5.86782 6.21855 6.23198 6.32409 6.89678 6.96210 7.40976 8.94282 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.045497 B = 0.003006 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.283669 B = 9311.447356 C = 9900.980992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.127 3.873 12 N -0.692 5.692 13 C 0.550 3.450 14 O -0.567 6.567 15 C -0.105 4.105 16 C -0.094 4.094 17 C 0.144 3.856 18 N -0.483 5.483 19 C 0.269 3.731 20 F -0.108 7.108 21 C 0.058 3.942 22 F -0.119 7.119 23 H 0.262 0.738 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.421 0.579 31 H 0.204 0.796 32 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.268 -17.914 -0.006 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.344 5.344 13 C 0.336 3.664 14 O -0.446 6.446 15 C -0.116 4.116 16 C -0.114 4.114 17 C -0.013 4.013 18 N -0.198 5.198 19 C 0.115 3.885 20 F -0.087 7.087 21 C 0.034 3.966 22 F -0.097 7.097 23 H 0.071 0.929 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.261 0.739 31 H 0.221 0.779 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 14.769 -18.689 -0.006 23.820 hybrid contribution -1.156 1.183 0.001 1.654 sum 13.613 -17.506 -0.006 22.176 Atomic orbital electron populations 1.70122 1.08010 1.27656 1.51943 1.26027 0.95696 1.03601 0.94943 0.85384 0.79408 0.78736 0.77415 1.17827 1.20870 1.20879 1.21731 0.93898 0.91854 1.50004 0.91129 1.18967 0.94562 0.93103 0.95077 1.21610 0.98431 0.91083 1.02786 1.21380 0.91895 0.85098 1.01257 1.45729 1.11829 1.04007 1.72881 1.18186 0.87479 0.83544 0.77228 1.90863 1.17930 1.85161 1.50650 1.20473 0.96529 0.90692 1.03938 1.22952 0.88810 1.04856 0.94787 1.23554 1.03406 0.83199 0.91147 1.67133 1.11985 1.27653 1.13007 1.18033 0.88778 0.79003 1.02724 1.91657 1.89440 1.34146 1.93447 1.18709 0.78789 0.93346 1.05789 1.91595 1.30905 1.93956 1.93252 0.92928 0.99035 0.99026 0.90676 0.90665 0.92746 0.92756 0.73939 0.77900 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.00 13.29 21.45 0.28 -55.71 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -28.44 9.11 25.60 0.23 -28.21 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.42 5.27 30.59 0.16 -3.26 16 11 C 0.13 3.98 5.67 86.38 0.49 4.47 16 12 N -0.69 -15.61 5.51 -465.82 -2.57 -18.18 16 13 C 0.55 14.82 7.79 86.83 0.68 15.50 16 14 O -0.57 -21.40 15.48 -3.81 -0.06 -21.46 16 15 C -0.10 -2.06 5.91 -19.86 -0.12 -2.17 16 16 C -0.09 -0.78 9.61 22.62 0.22 -0.56 16 17 C 0.14 1.04 11.16 84.60 0.94 1.98 16 18 N -0.48 -7.84 10.34 -196.92 -2.04 -9.88 16 19 C 0.27 5.72 8.42 84.84 0.71 6.44 16 20 F -0.11 -2.54 17.21 44.97 0.77 -1.77 16 21 C 0.06 1.39 7.34 22.83 0.17 1.56 16 22 F -0.12 -3.66 15.63 44.97 0.70 -2.95 16 23 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 30 H 0.42 5.52 6.61 -92.71 -0.61 4.90 16 31 H 0.20 -0.08 6.53 -2.91 -0.02 -0.10 16 32 H 0.24 -0.69 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -76.24 295.14 3.78 -72.46 By element: Atomic # 1 Polarization: -4.44 SS G_CDS: 0.56 Total: -3.88 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.10 Total: -2.93 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -4.32 Total: -83.77 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.48 Total: -4.72 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -76.24 3.78 -72.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097866507.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.892 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds