Wall clock time and date at job start Mon Mar 30 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47120 * 2 1 4 4 C 1.50702 * 109.46830 * 120.00122 * 2 1 3 5 5 C 1.38227 * 120.01108 * 93.95232 * 4 2 1 6 6 C 1.38217 * 120.02162 * 179.97438 * 5 4 2 7 7 C 1.38269 * 120.05459 * 359.97048 * 6 5 4 8 8 C 1.38170 * 120.02475 * 0.02562 * 7 6 5 9 9 C 1.38433 * 120.01150 * 273.92414 * 4 2 1 10 10 F 1.35098 * 120.02622 * 359.75041 * 9 4 2 11 11 S 1.81401 * 109.46724 * 239.99930 * 2 1 3 12 12 O 1.42098 * 109.47314 * 314.40698 * 11 2 1 13 13 C 1.81400 * 103.00114 * 70.79722 * 11 2 1 14 14 C 1.52997 * 109.47216 * 179.97438 * 13 11 2 15 15 C 1.50702 * 109.47172 * 179.97438 * 14 13 11 16 16 H 1.07993 * 119.99659 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00043 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00038 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47368 * 89.99835 * 19 17 15 21 21 H 1.48504 * 109.46972 * 210.00037 * 19 17 15 22 22 H 1.48502 * 109.46988 * 329.99436 * 19 17 15 23 23 H 1.08994 * 109.46967 * 299.99849 * 1 2 3 24 24 H 1.08997 * 109.47069 * 60.00114 * 1 2 3 25 25 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99043 * 359.97103 * 5 4 2 27 27 H 1.08004 * 119.97652 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.98549 * 179.97438 * 7 6 5 29 29 H 1.08002 * 120.01552 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47063 * 300.00145 * 13 11 2 31 31 H 1.09010 * 109.46814 * 59.99866 * 13 11 2 32 32 H 1.09000 * 109.47736 * 300.00361 * 14 13 11 33 33 H 1.09006 * 109.47162 * 60.00151 * 14 13 11 34 34 H 0.97003 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.3405 -2.0567 1.1741 6 6 2.8017 -2.7084 2.3024 7 6 2.9559 -2.0146 3.4884 8 6 2.6485 -0.6688 3.5471 9 6 2.1857 -0.0149 2.4175 10 9 1.8901 1.3022 2.4723 11 16 2.1346 -0.8552 -1.4812 12 8 1.4086 -2.0635 -1.6600 13 6 1.7225 0.3011 -2.8168 14 6 2.1762 -0.2837 -4.1558 15 6 1.8333 0.6766 -5.2654 16 1 1.3413 1.6107 -5.0382 17 6 2.1476 0.3625 -6.5706 18 7 1.8488 1.2007 -7.5389 19 14 2.9979 -1.2537 -6.9636 20 1 1.9767 -2.3011 -7.2190 21 1 3.8471 -1.0856 -8.1703 22 1 3.8461 -1.6591 -5.8140 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 2.2209 -2.5996 0.2482 27 1 3.0419 -3.7605 2.2576 28 1 3.3159 -2.5250 4.3694 29 1 2.7694 -0.1269 4.4735 30 1 0.6448 0.4634 -2.8372 31 1 2.2297 1.2505 -2.6447 32 1 3.2539 -0.4457 -4.1351 33 1 1.6694 -1.2333 -4.3280 34 1 2.0696 0.9796 -8.4572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123462097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:27 Heat of formation + Delta-G solvation = -68.389690 kcal Electronic energy + Delta-G solvation = -18034.393792 eV Core-core repulsion = 14973.153844 eV Total energy + Delta-G solvation = -3061.239948 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.99830 -39.29261 -35.41386 -34.34046 -33.73964 -31.33294 -30.74410 -29.58080 -25.61654 -24.27875 -23.01930 -21.62671 -20.67563 -17.80075 -17.43141 -16.99321 -16.37398 -16.11337 -15.71959 -14.94659 -14.69277 -14.48228 -14.21517 -14.07287 -13.64693 -13.19422 -13.12810 -12.68719 -12.42411 -12.29590 -12.20950 -11.79729 -11.70857 -11.40209 -11.08735 -11.03564 -10.60164 -10.20020 -9.98376 -9.49400 -9.29577 -9.07684 -8.79048 -8.59875 -7.85387 -6.10039 -4.09730 0.94709 0.99606 1.80757 2.94813 3.29532 3.36669 3.39061 3.39212 4.03082 4.11371 4.37584 4.40719 4.60666 4.77527 5.05416 5.08073 5.12135 5.23070 5.27397 5.51884 5.70502 5.76662 5.81823 5.88248 5.93308 5.96833 6.07901 6.14718 6.22824 6.57179 6.69936 7.03650 7.15559 7.66706 8.45963 8.92981 9.50787 11.02952 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.004416 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.156835 B = 6339.699789 C = 6798.140862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.384 4.384 3 H 0.128 0.872 4 C -0.077 4.077 5 C -0.109 4.109 6 C -0.120 4.120 7 C -0.099 4.099 8 C -0.153 4.153 9 C 0.104 3.896 10 F -0.137 7.137 11 S 1.223 4.777 12 O -0.845 6.845 13 C -0.406 4.406 14 C 0.004 3.996 15 C -0.519 4.519 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.262 1.262 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.146 0.854 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.028 0.972 33 H 0.018 0.982 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -4.588 22.466 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.499 4.499 3 H 0.146 0.854 4 C -0.078 4.078 5 C -0.127 4.127 6 C -0.138 4.138 7 C -0.117 4.117 8 C -0.172 4.172 9 C 0.084 3.916 10 F -0.115 7.115 11 S 1.423 4.577 12 O -0.840 6.840 13 C -0.546 4.546 14 C -0.035 4.035 15 C -0.558 4.558 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.187 1.187 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.164 0.836 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.348 -5.404 22.253 23.516 hybrid contribution -1.939 0.068 -0.436 1.989 sum 3.409 -5.337 21.817 22.718 Atomic orbital electron populations 1.21710 0.92033 1.02942 1.02797 1.26567 1.02768 1.09960 1.10573 0.85443 1.19244 1.01366 0.94230 0.93006 1.21452 0.97577 0.93119 1.00576 1.21194 0.99672 1.00507 0.92459 1.21017 0.99029 0.93321 0.98309 1.21126 1.02560 0.95821 0.97677 1.17549 1.01403 0.78248 0.94443 1.91486 1.91006 1.32074 1.96951 1.70486 1.17594 0.83400 0.86177 1.93071 1.75067 1.32706 1.83201 1.27419 1.07292 1.10615 1.09315 1.19252 0.96593 0.96923 0.90721 1.21018 1.39732 1.05107 0.89952 0.90831 1.25011 0.95250 0.96823 0.96238 1.69899 1.47593 1.36258 1.00143 0.86839 0.80295 0.84325 0.78316 1.20139 1.21053 1.18664 0.92271 0.91631 0.91742 0.83618 0.85075 0.85053 0.84787 0.89984 0.86986 0.95426 0.96331 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 8.98 37.16 0.33 -1.60 16 2 C -0.38 -5.03 2.75 -27.88 -0.08 -5.10 16 3 H 0.13 1.46 7.75 -51.93 -0.40 1.06 16 4 C -0.08 -0.95 4.99 -104.55 -0.52 -1.47 16 5 C -0.11 -1.30 9.08 -39.59 -0.36 -1.65 16 6 C -0.12 -1.13 10.04 -39.58 -0.40 -1.53 16 7 C -0.10 -0.82 10.04 -39.59 -0.40 -1.21 16 8 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 9 C 0.10 1.21 7.24 -39.42 -0.29 0.92 16 10 F -0.14 -1.70 16.55 2.25 0.04 -1.66 16 11 S 1.22 18.35 11.41 -107.50 -1.23 17.12 16 12 O -0.85 -16.73 16.10 -35.23 -0.57 -17.30 16 13 C -0.41 -7.56 5.72 37.16 0.21 -7.34 16 14 C 0.00 0.09 4.05 -27.88 -0.11 -0.02 16 15 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 16 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 19 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.93 7.29 -51.93 -0.38 0.55 16 25 H 0.06 0.99 7.94 -51.93 -0.41 0.57 16 26 H 0.15 1.91 5.35 -52.49 -0.28 1.63 16 27 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 28 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.08 1.61 7.39 -51.92 -0.38 1.22 16 31 H 0.11 1.83 8.14 -51.92 -0.42 1.40 16 32 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 33 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 301.55 15.07 4.54 4.54 Total: -1.00 -34.46 301.55 -7.87 -42.32 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.32 Total: -1.09 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: -2.43 Total: -33.99 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.57 Total: -17.30 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 18.35 SS G_CDS: -1.23 Total: 17.12 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.46 -7.87 -42.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123462097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.066 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds