Wall clock time and date at job start Mon Mar 30 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47120 * 2 1 4 4 C 1.50702 * 109.46830 * 120.00122 * 2 1 3 5 5 C 1.38227 * 120.01108 * 93.95232 * 4 2 1 6 6 C 1.38217 * 120.02162 * 179.97438 * 5 4 2 7 7 C 1.38269 * 120.05459 * 359.97048 * 6 5 4 8 8 C 1.38170 * 120.02475 * 0.02562 * 7 6 5 9 9 C 1.38433 * 120.01150 * 273.92414 * 4 2 1 10 10 F 1.35098 * 120.02622 * 359.75041 * 9 4 2 11 11 S 1.81401 * 109.46724 * 239.99930 * 2 1 3 12 12 O 1.42098 * 109.47314 * 314.40698 * 11 2 1 13 13 C 1.81400 * 103.00114 * 70.79722 * 11 2 1 14 14 C 1.52997 * 109.47216 * 179.97438 * 13 11 2 15 15 C 1.50702 * 109.47172 * 179.97438 * 14 13 11 16 16 H 1.07993 * 119.99659 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00000 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00043 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00038 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47368 * 89.99835 * 19 17 15 21 21 H 1.48504 * 109.46972 * 210.00037 * 19 17 15 22 22 H 1.48502 * 109.46988 * 329.99436 * 19 17 15 23 23 H 1.08994 * 109.46967 * 299.99849 * 1 2 3 24 24 H 1.08997 * 109.47069 * 60.00114 * 1 2 3 25 25 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99043 * 359.97103 * 5 4 2 27 27 H 1.08004 * 119.97652 * 179.97438 * 6 5 4 28 28 H 1.07998 * 119.98549 * 179.97438 * 7 6 5 29 29 H 1.08002 * 120.01552 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47063 * 300.00145 * 13 11 2 31 31 H 1.09010 * 109.46814 * 59.99866 * 13 11 2 32 32 H 1.09000 * 109.47736 * 300.00361 * 14 13 11 33 33 H 1.09006 * 109.47162 * 60.00151 * 14 13 11 34 34 H 0.97003 * 120.00183 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.3405 -2.0567 1.1741 6 6 2.8017 -2.7084 2.3024 7 6 2.9559 -2.0146 3.4884 8 6 2.6485 -0.6688 3.5471 9 6 2.1857 -0.0149 2.4175 10 9 1.8901 1.3022 2.4723 11 16 2.1346 -0.8552 -1.4812 12 8 1.4086 -2.0635 -1.6600 13 6 1.7225 0.3011 -2.8168 14 6 2.1762 -0.2837 -4.1558 15 6 1.8333 0.6766 -5.2654 16 1 1.3413 1.6107 -5.0382 17 6 2.1476 0.3625 -6.5706 18 7 1.8488 1.2007 -7.5389 19 14 2.9979 -1.2537 -6.9636 20 1 1.9767 -2.3011 -7.2190 21 1 3.8471 -1.0856 -8.1703 22 1 3.8461 -1.6591 -5.8140 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 2.2209 -2.5996 0.2482 27 1 3.0419 -3.7605 2.2576 28 1 3.3159 -2.5250 4.3694 29 1 2.7694 -0.1269 4.4735 30 1 0.6448 0.4634 -2.8372 31 1 2.2297 1.2505 -2.6447 32 1 3.2539 -0.4457 -4.1351 33 1 1.6694 -1.2333 -4.3280 34 1 2.0696 0.9796 -8.4572 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123462097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:27 Heat of formation + Delta-G solvation = -90.657559 kcal Electronic energy + Delta-G solvation = -18035.359399 eV Core-core repulsion = 14973.153844 eV Total energy + Delta-G solvation = -3062.205556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.87523 -40.09373 -36.85765 -35.73666 -35.32867 -33.30415 -31.55189 -30.50929 -27.55433 -25.26720 -23.82656 -23.07238 -22.03564 -19.24231 -18.60352 -18.46934 -17.42605 -17.05459 -16.60181 -16.42561 -16.00331 -15.90350 -15.51910 -15.33435 -14.75052 -14.74198 -14.27705 -14.07583 -13.61703 -13.53921 -13.46899 -13.11086 -12.94949 -12.74313 -12.59885 -12.21692 -12.05199 -11.90844 -11.78529 -11.54770 -10.81593 -10.78544 -9.94554 -9.64125 -9.19001 -8.33067 -6.38470 0.12768 0.21730 0.57283 1.35169 1.36368 1.48066 1.66767 2.33571 2.61132 2.76278 3.01914 3.30922 3.40327 3.84179 3.95679 4.06359 4.18646 4.19846 4.33778 4.38338 4.39377 4.46689 4.69609 4.80647 4.90054 4.97374 5.10612 5.19644 5.29332 5.30410 5.34706 5.48088 5.56314 5.94273 6.22764 6.68309 7.26071 8.83361 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.004416 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.156835 B = 6339.699789 C = 6798.140862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.376 4.376 3 H 0.148 0.852 4 C -0.095 4.095 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.087 4.087 8 C -0.148 4.148 9 C 0.087 3.913 10 F -0.145 7.145 11 S 1.291 4.709 12 O -0.892 6.892 13 C -0.420 4.420 14 C 0.001 3.999 15 C -0.532 4.532 16 H 0.035 0.965 17 C 0.007 3.993 18 N -0.949 5.949 19 Si 0.939 3.061 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.232 1.232 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.129 0.871 27 H 0.155 0.845 28 H 0.169 0.831 29 H 0.159 0.841 30 H 0.062 0.938 31 H 0.133 0.867 32 H 0.052 0.948 33 H 0.004 0.996 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -6.112 25.379 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.493 4.493 3 H 0.165 0.835 4 C -0.097 4.097 5 C -0.148 4.148 6 C -0.135 4.135 7 C -0.104 4.104 8 C -0.167 4.167 9 C 0.067 3.933 10 F -0.124 7.124 11 S 1.492 4.508 12 O -0.887 6.887 13 C -0.558 4.558 14 C -0.038 4.038 15 C -0.571 4.571 16 H 0.053 0.947 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.761 3.239 20 H -0.203 1.203 21 H -0.200 1.200 22 H -0.155 1.155 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.187 0.813 29 H 0.176 0.824 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.222 -6.922 25.145 27.062 hybrid contribution -2.583 0.593 -1.150 2.889 sum 4.639 -6.328 23.995 25.245 Atomic orbital electron populations 1.21710 0.92938 1.01937 1.03079 1.26429 1.02108 1.10940 1.09804 0.83465 1.19157 1.03019 0.94600 0.92895 1.21429 0.99229 0.93025 1.01096 1.21519 0.98346 1.01708 0.91955 1.21452 0.97157 0.92831 0.98984 1.21492 1.01063 0.96422 0.97716 1.17741 1.02470 0.78060 0.94995 1.91465 1.91248 1.32660 1.97008 1.69941 1.15681 0.80676 0.84493 1.92973 1.76127 1.35593 1.84040 1.27497 1.06187 1.12953 1.09129 1.19191 0.97880 0.95093 0.91626 1.21397 1.39015 1.04751 0.91910 0.94661 1.25999 0.96165 1.00858 0.96056 1.70048 1.49382 1.38701 1.00756 0.85824 0.79557 0.79078 0.79402 1.20301 1.20001 1.15490 0.91000 0.92365 0.93376 0.85357 0.82746 0.81334 0.82357 0.91911 0.84909 0.92993 0.97759 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 8.98 71.98 0.65 -3.25 16 2 C -0.38 -9.47 2.75 29.85 0.08 -9.39 16 3 H 0.15 3.13 7.75 -2.39 -0.02 3.11 16 4 C -0.09 -2.20 4.99 -19.82 -0.10 -2.30 16 5 C -0.13 -2.86 9.08 22.26 0.20 -2.66 16 6 C -0.12 -1.83 10.04 22.27 0.22 -1.60 16 7 C -0.09 -1.05 10.04 22.26 0.22 -0.83 16 8 C -0.15 -2.23 10.03 22.31 0.22 -2.00 16 9 C 0.09 1.83 7.24 22.38 0.16 1.99 16 10 F -0.15 -3.33 16.55 44.97 0.74 -2.59 16 11 S 1.29 37.89 11.41 -56.49 -0.64 37.24 16 12 O -0.89 -35.31 16.10 -148.98 -2.40 -37.71 16 13 C -0.42 -15.69 5.72 71.98 0.41 -15.28 16 14 C 0.00 0.03 4.05 29.85 0.12 0.15 16 15 C -0.53 -31.04 9.66 25.60 0.25 -30.79 16 16 H 0.04 2.25 7.99 -2.91 -0.02 2.22 16 17 C 0.01 0.39 5.47 84.66 0.46 0.85 16 18 N -0.95 -59.97 13.96 21.45 0.30 -59.68 16 19 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.23 -9.75 6.54 99.48 0.65 -9.10 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.06 1.68 7.29 -2.39 -0.02 1.67 16 25 H 0.05 1.49 7.94 -2.39 -0.02 1.47 16 26 H 0.13 3.29 5.35 -2.91 -0.02 3.27 16 27 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.06 2.54 7.39 -2.39 -0.02 2.53 16 31 H 0.13 4.29 8.14 -2.38 -0.02 4.27 16 32 H 0.05 2.19 7.20 -2.39 -0.02 2.17 16 33 H 0.00 0.20 7.57 -2.38 -0.02 0.18 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -77.08 301.55 3.83 -73.25 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.04 Total: 8.41 kcal Atomic # 6 Polarization: -68.01 SS G_CDS: 2.91 Total: -65.10 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.30 Total: -59.68 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -2.40 Total: -37.71 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.74 Total: -2.59 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 16 Polarization: 37.89 SS G_CDS: -0.64 Total: 37.24 kcal Total: -77.08 3.83 -73.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123462097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.404 kcal (2) G-P(sol) polarization free energy of solvation -77.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds