Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47319 * 2 1 4 4 C 1.50707 * 109.46756 * 240.00469 * 2 1 3 5 5 C 1.38216 * 120.01546 * 94.99997 * 4 2 1 6 6 C 1.38217 * 120.02581 * 180.02562 * 5 4 2 7 7 C 1.38265 * 120.05343 * 0.02562 * 6 5 4 8 8 C 1.38181 * 120.02597 * 359.97438 * 7 6 5 9 9 C 1.38443 * 120.00897 * 275.01956 * 4 2 1 10 10 F 1.35099 * 120.02540 * 359.97438 * 9 4 2 11 11 S 1.81398 * 109.47259 * 120.00454 * 2 1 3 12 12 O 1.42097 * 109.47155 * 188.61159 * 11 2 1 13 13 C 1.81405 * 102.99742 * 304.99699 * 11 2 1 14 14 C 1.52996 * 109.47190 * 180.02562 * 13 11 2 15 15 C 1.50702 * 109.47464 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99433 * 0.02562 * 15 14 13 17 17 C 1.37869 * 119.99965 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00298 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99853 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46658 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47048 * 119.99993 * 19 17 15 22 22 H 1.48491 * 109.47004 * 240.00001 * 19 17 15 23 23 H 1.08998 * 109.47072 * 59.99365 * 1 2 3 24 24 H 1.08997 * 109.47319 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46734 * 300.00089 * 1 2 3 26 26 H 1.08000 * 119.98343 * 359.97438 * 5 4 2 27 27 H 1.07997 * 119.97708 * 180.02562 * 6 5 4 28 28 H 1.07999 * 119.99414 * 179.72576 * 7 6 5 29 29 H 1.08002 * 120.01438 * 180.02562 * 8 7 6 30 30 H 1.09001 * 109.47066 * 299.99973 * 13 11 2 31 31 H 1.09007 * 109.47048 * 60.00360 * 13 11 2 32 32 H 1.08998 * 109.47433 * 300.00336 * 14 13 11 33 33 H 1.09007 * 109.47071 * 59.99728 * 14 13 11 34 34 H 0.97004 * 120.00369 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.3611 0.0137 -2.3611 6 6 2.8212 -0.6376 -3.4900 7 6 2.9527 -2.0140 -3.4901 8 6 2.6247 -2.7400 -2.3611 9 6 2.1641 -2.0885 -1.2292 10 9 1.8432 -2.7972 -0.1247 11 16 2.1347 -0.8552 1.4810 12 8 3.5415 -0.6840 1.5857 13 6 1.3150 0.0373 2.8309 14 6 1.7289 -0.5731 4.1713 15 6 1.0484 0.1688 5.2928 16 1 0.3865 0.9929 5.0714 17 6 1.2701 -0.2054 6.6011 18 7 2.0757 -1.2093 6.8705 19 14 0.4260 0.7138 7.9912 20 1 -0.4233 1.7933 7.4267 21 1 -0.4216 -0.2287 8.7649 22 1 1.4512 1.3069 8.8867 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.2575 1.0887 -2.3626 27 1 3.0783 -0.0711 -4.3728 28 1 3.3082 -2.5223 -4.3742 29 1 2.7279 -3.8151 -2.3612 30 1 1.6087 1.0867 2.8037 31 1 0.2340 -0.0405 2.7142 32 1 1.4356 -1.6225 4.1988 33 1 2.8099 -0.4949 4.2878 34 1 2.2320 -1.4723 7.7910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123462309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = -89.982954 kcal Electronic energy + Delta-G solvation = -18180.164480 eV Core-core repulsion = 15117.988178 eV Total energy + Delta-G solvation = -3062.176303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.083 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.02629 -40.05787 -36.87276 -35.78431 -35.28199 -32.94522 -31.54607 -30.37169 -27.33099 -25.17322 -23.78145 -23.43585 -22.17321 -18.84850 -18.72442 -18.22846 -17.68686 -17.04454 -16.79132 -16.51606 -15.80066 -15.71679 -15.54520 -15.22885 -14.89052 -14.37496 -14.33461 -14.14093 -13.71133 -13.47066 -13.09409 -12.98544 -12.72744 -12.67218 -12.56474 -12.50909 -12.05277 -11.89447 -11.78416 -11.51412 -10.75511 -10.62516 -9.91540 -9.66151 -9.07565 -8.22782 -6.37166 0.08492 0.22936 0.61238 1.38741 1.40053 1.53362 1.72695 2.38981 2.61230 2.80904 3.08898 3.24393 3.43324 3.78015 4.00113 4.16332 4.22907 4.26651 4.39184 4.42101 4.43788 4.76861 4.88551 4.93423 5.01145 5.07357 5.18439 5.28493 5.36642 5.39215 5.45395 5.46177 5.73855 5.93462 6.14390 6.77432 7.32511 8.88773 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044653 B = 0.004208 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.908035 B = 6652.467970 C = 6888.390253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.371 4.371 3 H 0.096 0.904 4 C -0.104 4.104 5 C -0.099 4.099 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.150 4.150 9 C 0.059 3.941 10 F -0.137 7.137 11 S 1.267 4.733 12 O -0.919 6.919 13 C -0.424 4.424 14 C 0.037 3.963 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.973 3.027 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.282 1.282 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.143 0.857 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.159 0.841 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.021 0.979 33 H -0.027 1.027 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -1.568 -23.958 24.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.489 4.489 3 H 0.115 0.885 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.139 4.139 7 C -0.111 4.111 8 C -0.168 4.168 9 C 0.039 3.961 10 F -0.116 7.116 11 S 1.470 4.530 12 O -0.915 6.915 13 C -0.562 4.562 14 C -0.001 4.001 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.796 3.204 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.208 1.208 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.160 0.840 27 H 0.179 0.821 28 H 0.186 0.814 29 H 0.176 0.824 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.039 0.961 33 H -0.009 1.009 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.453 -2.450 -23.715 24.254 hybrid contribution 0.657 2.425 1.513 2.933 sum -3.797 -0.024 -22.202 22.524 Atomic orbital electron populations 1.21590 0.87514 1.04742 1.04201 1.26371 1.05979 1.08120 1.08455 0.88529 1.19391 1.03225 0.91878 0.96148 1.21218 0.97828 1.00939 0.91795 1.21625 0.98451 0.95199 0.98659 1.21497 0.97314 0.94120 0.98158 1.21521 1.00810 1.02498 0.91978 1.18054 1.03586 0.89340 0.85112 1.91420 1.90762 1.78128 1.51261 1.70856 0.87573 1.08835 0.85774 1.92940 1.29560 1.83682 1.85304 1.27662 1.11118 1.07632 1.09795 1.18639 0.94139 0.96387 0.90974 1.21660 1.27852 1.16711 0.91789 0.91486 1.26100 0.95903 0.96065 1.02084 1.70122 1.37838 1.29086 1.20381 0.85291 0.78269 0.78684 0.78143 1.18251 1.19557 1.20818 0.89823 0.89670 0.90658 0.83955 0.82086 0.81401 0.82354 0.91998 0.84132 0.96118 1.00907 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.92 71.98 0.64 -1.84 16 2 C -0.37 -10.21 3.03 29.85 0.09 -10.11 16 3 H 0.10 2.69 8.05 -2.39 -0.02 2.67 16 4 C -0.10 -2.66 4.90 -19.82 -0.10 -2.76 16 5 C -0.10 -1.98 9.68 22.26 0.22 -1.76 16 6 C -0.12 -1.79 10.04 22.27 0.22 -1.56 16 7 C -0.09 -1.30 10.04 22.26 0.22 -1.08 16 8 C -0.15 -2.81 10.03 22.31 0.22 -2.58 16 9 C 0.06 1.49 6.96 22.38 0.16 1.65 16 10 F -0.14 -3.78 14.19 44.97 0.64 -3.14 16 11 S 1.27 47.98 9.63 -56.49 -0.54 47.43 16 12 O -0.92 -47.30 18.14 -148.98 -2.70 -50.01 16 13 C -0.42 -18.05 5.26 71.98 0.38 -17.67 16 14 C 0.04 2.07 4.98 29.85 0.15 2.22 16 15 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.93 -58.79 13.29 21.44 0.28 -58.51 16 19 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 20 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.50 6.51 -2.39 -0.02 1.48 16 26 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 27 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 29 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.14 4.89 6.90 -2.39 -0.02 4.87 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H -0.03 -1.79 8.14 -2.38 -0.02 -1.81 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.51 304.97 3.69 -78.82 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.09 Total: 5.27 kcal Atomic # 6 Polarization: -69.76 SS G_CDS: 2.90 Total: -66.86 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.28 Total: -58.51 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.70 Total: -50.01 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.64 Total: -3.14 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -0.54 Total: 47.43 kcal Total: -82.51 3.69 -78.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123462309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.159 kcal (2) G-P(sol) polarization free energy of solvation -82.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds