Wall clock time and date at job start Mon Mar 30 2020 01:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21343 * 119.99891 * 2 1 4 4 C 1.46463 * 120.00269 * 179.72113 * 2 1 3 5 5 C 1.40369 * 120.21772 * 0.27890 * 4 2 1 6 6 F 1.35103 * 120.08780 * 359.95395 * 5 4 2 7 7 C 1.37912 * 119.82955 * 179.97438 * 5 4 2 8 8 C 1.38788 * 120.27964 * 359.97438 * 7 5 4 9 9 F 1.35107 * 119.77219 * 180.02562 * 8 7 5 10 10 C 1.38459 * 120.44912 * 0.02562 * 8 7 5 11 11 C 1.38445 * 120.16162 * 359.69942 * 10 8 7 12 12 O 1.35607 * 120.14563 * 180.29506 * 11 10 8 13 13 C 1.42903 * 116.99688 * 0.25914 * 12 11 10 14 14 C 1.53000 * 109.47313 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47385 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00120 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00349 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99361 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47471 * 90.00196 * 19 17 15 21 21 H 1.48501 * 109.46705 * 210.00134 * 19 17 15 22 22 H 1.48495 * 109.47207 * 329.99725 * 19 17 15 23 23 H 1.09001 * 109.47438 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46801 * 120.00388 * 1 2 3 25 25 H 1.09000 * 109.46987 * 239.99619 * 1 2 3 26 26 H 1.07996 * 119.85838 * 179.97438 * 7 5 4 27 27 H 1.08001 * 119.91500 * 179.97438 * 10 8 7 28 28 H 1.09003 * 109.47029 * 299.99670 * 13 12 11 29 29 H 1.08994 * 109.47206 * 59.99679 * 13 12 11 30 30 H 1.09003 * 109.46889 * 299.99861 * 14 13 12 31 31 H 1.08999 * 109.47128 * 59.99278 * 14 13 12 32 32 H 0.97003 * 119.99785 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0509 0.0000 4 6 2.2393 -1.2684 0.0062 5 6 1.5422 -2.4867 0.0062 6 9 0.1912 -2.4940 0.0015 7 6 2.2399 -3.6763 0.0115 8 6 3.6278 -3.6736 0.0163 9 9 4.3009 -4.8450 0.0209 10 6 4.3271 -2.4786 0.0163 11 6 3.6454 -1.2737 0.0053 12 8 4.3307 -0.1035 -0.0007 13 6 5.7573 -0.1872 -0.0009 14 6 6.3509 1.2229 -0.0087 15 6 7.8553 1.1346 -0.0083 16 1 8.3396 0.1693 -0.0034 17 6 8.6135 2.2862 -0.0152 18 7 8.0237 3.4616 -0.0226 19 14 10.4783 2.1767 -0.0153 20 1 10.9719 2.1398 -1.4154 21 1 11.0437 3.3621 0.6777 22 1 10.9017 0.9414 0.6916 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 -0.3633 -0.5139 0.8900 26 1 1.7040 -4.6139 0.0119 27 1 5.4071 -2.4865 0.0204 28 1 6.0902 -0.7171 0.8916 29 1 6.0895 -0.7258 -0.8883 30 1 6.0179 1.7523 -0.9014 31 1 6.0186 1.7619 0.8785 32 1 8.5571 4.2719 -0.0271 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129035450.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:58 Heat of formation + Delta-G solvation = -163.825674 kcal Electronic energy + Delta-G solvation = -20024.783052 eV Core-core repulsion = 16393.191513 eV Total energy + Delta-G solvation = -3631.591539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.32799 -50.23439 -41.57631 -39.80821 -38.26897 -35.50365 -32.88550 -32.38522 -31.12413 -30.16921 -27.12469 -24.96754 -24.14607 -22.80482 -21.40332 -19.97636 -18.63962 -18.49837 -17.84966 -17.59359 -17.22985 -16.98567 -16.83984 -16.59124 -16.50900 -15.70162 -15.65518 -15.55928 -15.52859 -14.43470 -14.32564 -14.26273 -13.79362 -13.12952 -13.07944 -12.86740 -12.83376 -12.68409 -12.50174 -12.47322 -11.68474 -11.66754 -11.45662 -10.80244 -10.64189 -10.08430 -9.62017 -8.27490 -6.42525 -0.75078 -0.08692 1.20312 1.40454 1.43235 1.54197 1.86027 2.25009 2.39020 2.64911 2.98563 3.07022 3.08833 3.47389 3.71336 3.72672 4.11756 4.13450 4.17740 4.45061 4.48356 4.58705 4.61755 4.66452 4.77928 4.87104 5.18234 5.27297 5.41592 5.42864 5.67454 6.01375 6.21385 6.57266 6.72889 7.28200 8.85786 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.022666 B = 0.004651 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.036883 B = 6019.090204 C = 7228.366989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.382 3.618 3 O -0.487 6.487 4 C -0.279 4.279 5 C 0.230 3.770 6 F -0.100 7.100 7 C -0.229 4.229 8 C 0.210 3.790 9 F -0.118 7.118 10 C -0.278 4.278 11 C 0.223 3.777 12 O -0.302 6.302 13 C 0.072 3.928 14 C 0.030 3.970 15 C -0.546 4.546 16 H 0.076 0.924 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.979 3.021 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.256 1.256 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.191 0.809 27 H 0.158 0.842 28 H 0.074 0.926 29 H 0.074 0.926 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 -17.483 0.079 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.263 3.737 3 O -0.365 6.365 4 C -0.282 4.282 5 C 0.210 3.790 6 F -0.078 7.078 7 C -0.249 4.249 8 C 0.190 3.810 9 F -0.096 7.096 10 C -0.297 4.297 11 C 0.173 3.827 12 O -0.213 6.213 13 C -0.002 4.002 14 C -0.007 4.007 15 C -0.584 4.584 16 H 0.094 0.906 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.802 3.198 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.180 1.180 23 H 0.102 0.898 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.208 0.792 27 H 0.175 0.825 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.416 -16.575 0.080 21.968 hybrid contribution 1.073 0.269 -0.015 1.106 sum -13.343 -16.307 0.065 21.070 Atomic orbital electron populations 1.22414 0.89680 1.05734 1.06521 1.22752 0.93492 0.86512 0.70977 1.90701 1.73131 1.35095 1.37597 1.20099 0.91432 0.96241 1.20459 1.16723 0.77199 0.91072 0.94030 1.91584 1.26693 1.97029 1.92478 1.21007 0.92138 0.99745 1.11974 1.17088 0.89470 0.80281 0.94152 1.91580 1.80326 1.45004 1.92706 1.21352 1.02885 0.90572 1.14934 1.18980 0.90679 0.85525 0.87512 1.86364 1.22449 1.27591 1.84858 1.23197 0.74607 1.00669 1.01707 1.18935 0.95205 0.90716 0.95885 1.21393 0.90848 0.93803 1.52306 0.90590 1.26089 1.04974 0.94668 0.94082 1.70149 1.38063 0.98442 1.50483 0.85247 0.77654 0.78244 0.78681 1.19526 1.20829 1.18026 0.89826 0.86637 0.86627 0.79185 0.82461 0.90785 0.90782 0.98702 0.98694 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.59 8.51 71.23 0.61 -2.98 16 2 C 0.38 11.78 7.20 27.83 0.20 11.98 16 3 O -0.49 -20.76 15.89 17.75 0.28 -20.48 16 4 C -0.28 -7.89 5.89 -20.04 -0.12 -8.00 16 5 C 0.23 4.50 7.26 22.71 0.16 4.66 16 6 F -0.10 -1.52 13.75 44.97 0.62 -0.90 16 7 C -0.23 -3.80 9.98 22.32 0.22 -3.58 16 8 C 0.21 4.39 7.30 22.45 0.16 4.56 16 9 F -0.12 -2.37 17.26 44.97 0.78 -1.59 16 10 C -0.28 -7.43 9.00 22.37 0.20 -7.23 16 11 C 0.22 7.36 6.70 22.90 0.15 7.52 16 12 O -0.30 -12.92 8.20 -68.20 -0.56 -13.48 16 13 C 0.07 3.08 4.68 71.98 0.34 3.41 16 14 C 0.03 1.66 5.34 29.85 0.16 1.82 16 15 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 16 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 17 C 0.00 0.02 5.46 84.66 0.46 0.49 16 18 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 19 Si 0.98 43.53 29.54 68.60 2.03 45.56 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 23 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 24 H 0.12 1.69 7.41 -2.38 -0.02 1.67 16 25 H 0.12 1.69 7.40 -2.39 -0.02 1.67 16 26 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 27 H 0.16 4.11 6.29 -2.91 -0.02 4.09 16 28 H 0.07 2.87 7.65 -2.39 -0.02 2.85 16 29 H 0.07 2.87 7.67 -2.39 -0.02 2.85 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -71.82 290.59 7.37 -64.45 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.16 Total: 1.83 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 2.79 Total: -17.88 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.28 Total: -57.50 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.28 Total: -33.95 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 1.39 Total: -2.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.82 7.37 -64.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129035450.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.379 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds