Wall clock time and date at job start Mon Mar 30 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47069 * 2 1 4 4 N 1.29506 * 126.14321 * 89.96872 * 3 2 1 5 5 N 1.26246 * 116.57841 * 180.02562 * 4 3 2 6 6 C 1.29890 * 117.66727 * 359.97438 * 5 4 3 7 7 N 1.39073 * 125.65995 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99975 * 0.03053 * 7 6 5 9 9 O 1.21577 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99964 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00053 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47077 * 34.99783 * 11 10 8 13 13 C 1.53008 * 109.47016 * 275.00255 * 11 10 8 14 14 C 1.50695 * 109.47337 * 155.00261 * 11 10 8 15 15 H 1.07998 * 120.00418 * 5.62270 * 14 11 10 16 16 C 1.37879 * 120.00201 * 185.62926 * 14 11 10 17 17 N 1.31514 * 120.00393 * 197.18198 * 16 14 11 18 18 Si 1.86804 * 119.99786 * 17.45333 * 16 14 11 19 19 H 1.48502 * 109.46953 * 179.73110 * 18 16 14 20 20 H 1.48503 * 109.46948 * 299.72609 * 18 16 14 21 21 H 1.48501 * 109.46997 * 59.72834 * 18 16 14 22 22 S 1.71317 * 108.68459 * 0.24693 * 6 5 4 23 23 H 1.08991 * 109.47716 * 300.00827 * 1 2 3 24 24 H 1.09004 * 109.46525 * 60.00781 * 1 2 3 25 25 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08987 * 109.47319 * 239.99472 * 2 1 3 27 27 H 1.09004 * 109.46525 * 119.99219 * 2 1 3 28 28 H 0.97002 * 120.00541 * 180.02562 * 7 6 5 29 29 H 0.96996 * 120.00288 * 0.02562 * 10 8 7 30 30 H 1.08994 * 109.46957 * 66.33318 * 13 11 10 31 31 H 1.09002 * 109.47065 * 186.34089 * 13 11 10 32 32 H 1.09000 * 109.46665 * 306.33574 * 13 11 10 33 33 H 0.97001 * 119.99221 * 355.17115 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2864 2.1412 1.0458 5 7 2.7010 3.3150 0.8360 6 6 2.8362 3.6953 -0.3986 7 7 3.2775 4.9457 -0.8181 8 6 3.6080 5.8837 0.0915 9 8 3.5200 5.6370 1.2787 10 7 4.0361 7.0953 -0.3151 11 6 4.3960 8.1147 0.6736 12 1 4.8516 7.6357 1.5401 13 6 3.1379 8.8683 1.1102 14 6 5.3751 9.0836 0.0625 15 1 5.6278 9.0078 -0.9848 16 6 5.9486 10.0670 0.8404 17 7 6.5239 11.1037 0.2714 18 14 5.9151 9.9229 2.7026 19 1 6.5989 11.0968 3.3022 20 1 4.5064 9.8784 3.1703 21 1 6.6133 8.6790 3.1154 22 16 2.3736 2.4036 -1.4245 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 3.3474 5.1427 -1.7653 29 1 4.1060 7.2923 -1.2623 30 1 2.4783 8.1906 1.6521 31 1 3.4183 9.6985 1.7585 32 1 2.6210 9.2525 0.2308 33 1 6.6070 11.1427 -0.6943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153541986.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:48 Heat of formation + Delta-G solvation = 36.920798 kcal Electronic energy + Delta-G solvation = -17962.943782 eV Core-core repulsion = 14958.483152 eV Total energy + Delta-G solvation = -3004.460630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25852 -39.66015 -35.85964 -34.75101 -34.14407 -32.51307 -30.18577 -29.03723 -26.28550 -24.87667 -23.83770 -22.24504 -20.41894 -19.83249 -19.45935 -18.00207 -17.52191 -16.83785 -16.08955 -15.18491 -14.87121 -14.57787 -14.22546 -14.03477 -13.46746 -13.30641 -12.94978 -12.68741 -12.29026 -12.12326 -11.85055 -11.58375 -11.56574 -11.12566 -10.58586 -10.49550 -10.23872 -10.04883 -9.80635 -9.69231 -9.54004 -9.13768 -8.74192 -8.36798 -8.24607 -6.63397 -4.27156 0.46553 0.47304 1.12104 2.64182 2.64567 3.38616 3.45669 3.59656 3.61280 4.01391 4.37233 4.40600 4.66362 4.86682 4.98667 5.05703 5.13587 5.45920 5.46791 5.64705 5.85067 6.07853 6.29503 6.49069 6.60333 6.67714 6.95631 7.29536 7.31125 7.62137 8.18537 8.38964 8.64543 8.74336 8.94629 9.41792 10.77966 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047728 B = 0.003853 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.521918 B = 7264.956529 C = 7561.958951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.005 4.005 4 N -0.223 5.223 5 N -0.272 5.272 6 C 0.267 3.733 7 N -0.639 5.639 8 C 0.685 3.315 9 O -0.534 6.534 10 N -0.707 5.707 11 C 0.259 3.741 12 H 0.044 0.956 13 C -0.163 4.163 14 C -0.619 4.619 15 H 0.062 0.938 16 C 0.041 3.959 17 N -0.896 5.896 18 Si 1.041 2.959 19 H -0.282 1.282 20 H -0.270 1.270 21 H -0.279 1.279 22 S 0.082 5.918 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.418 0.582 29 H 0.391 0.609 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.484 -19.686 -7.175 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 C -0.288 4.288 4 N -0.058 5.058 5 N -0.116 5.116 6 C -0.105 4.105 7 N -0.294 5.294 8 C 0.382 3.618 9 O -0.405 6.405 10 N -0.359 5.359 11 C 0.155 3.845 12 H 0.062 0.938 13 C -0.221 4.221 14 C -0.657 4.657 15 H 0.080 0.920 16 C -0.166 4.166 17 N -0.528 5.528 18 Si 0.868 3.132 19 H -0.208 1.208 20 H -0.196 1.196 21 H -0.205 1.205 22 S 0.320 5.680 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.255 0.745 29 H 0.224 0.776 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.028 -18.783 -4.309 21.724 hybrid contribution -0.228 -0.422 -2.615 2.659 sum -10.256 -19.205 -6.925 22.847 Atomic orbital electron populations 1.21799 0.93438 1.02620 1.02903 1.20089 0.96662 0.86448 1.04518 1.29860 1.07470 1.03130 0.88356 1.71426 1.10322 0.98106 1.25984 1.71592 1.18676 1.07025 1.14313 1.25657 0.99784 0.92511 0.92557 1.42388 1.67429 1.08771 1.10778 1.16252 0.79635 0.80843 0.85045 1.91041 1.57002 1.78786 1.13667 1.45604 1.68053 1.11058 1.11200 1.19017 0.92805 0.84398 0.88241 0.93832 1.22534 0.98970 1.00242 1.00378 1.22052 1.28609 1.16986 0.98074 0.91973 1.25689 0.93191 0.91010 1.06718 1.70893 1.42978 1.25798 1.13174 0.84096 0.77592 0.76608 0.74915 1.20806 1.19620 1.20465 1.84610 1.64316 1.07004 1.12058 0.91758 0.92349 0.91235 0.89430 0.88267 0.74514 0.77559 0.94988 0.91670 0.93692 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.90 37.16 0.37 -0.59 16 2 C -0.04 -0.26 6.56 -27.88 -0.18 -0.44 16 3 C -0.01 -0.06 7.05 -13.26 -0.09 -0.15 16 4 N -0.22 -3.66 11.65 33.58 0.39 -3.27 16 5 N -0.27 -5.19 9.73 29.97 0.29 -4.90 16 6 C 0.27 4.16 8.14 -87.06 -0.71 3.46 16 7 N -0.64 -9.63 5.41 -17.32 -0.09 -9.72 16 8 C 0.68 13.69 8.49 -86.92 -0.74 12.95 16 9 O -0.53 -13.11 14.69 5.30 0.08 -13.03 16 10 N -0.71 -14.09 5.07 -59.81 -0.30 -14.40 16 11 C 0.26 6.21 2.14 -69.08 -0.15 6.07 16 12 H 0.04 1.15 6.23 -51.93 -0.32 0.83 16 13 C -0.16 -3.70 9.16 37.16 0.34 -3.36 16 14 C -0.62 -16.54 9.00 -34.44 -0.31 -16.85 16 15 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 16 C 0.04 1.14 5.29 -17.82 -0.09 1.05 16 17 N -0.90 -26.42 13.70 55.43 0.76 -25.66 16 18 Si 1.04 25.16 26.29 -169.99 -4.47 20.69 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.14 5.76 56.52 0.33 -5.81 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 S 0.08 0.86 23.31 -107.50 -2.51 -1.65 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.44 8.14 -51.94 -0.42 0.02 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.42 4.37 8.83 -40.82 -0.36 4.01 16 29 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.52 4.88 -51.93 -0.25 1.26 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -34.83 297.73 -6.82 -41.65 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -3.89 Total: 3.66 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -1.57 Total: 2.13 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 1.04 Total: -57.94 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.47 Total: 20.69 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.83 -6.82 -41.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153541986.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.574 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds