Wall clock time and date at job start Mon Mar 30 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47069 * 2 1 4 4 N 1.29506 * 126.14321 * 89.96872 * 3 2 1 5 5 N 1.26246 * 116.57841 * 180.02562 * 4 3 2 6 6 C 1.29890 * 117.66727 * 359.97438 * 5 4 3 7 7 N 1.39073 * 125.65995 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99975 * 0.03053 * 7 6 5 9 9 O 1.21577 * 120.00044 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99964 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00053 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47077 * 34.99783 * 11 10 8 13 13 C 1.53008 * 109.47016 * 275.00255 * 11 10 8 14 14 C 1.50695 * 109.47337 * 155.00261 * 11 10 8 15 15 H 1.07998 * 120.00418 * 5.62270 * 14 11 10 16 16 C 1.37879 * 120.00201 * 185.62926 * 14 11 10 17 17 N 1.31514 * 120.00393 * 197.18198 * 16 14 11 18 18 Si 1.86804 * 119.99786 * 17.45333 * 16 14 11 19 19 H 1.48502 * 109.46953 * 179.73110 * 18 16 14 20 20 H 1.48503 * 109.46948 * 299.72609 * 18 16 14 21 21 H 1.48501 * 109.46997 * 59.72834 * 18 16 14 22 22 S 1.71317 * 108.68459 * 0.24693 * 6 5 4 23 23 H 1.08991 * 109.47716 * 300.00827 * 1 2 3 24 24 H 1.09004 * 109.46525 * 60.00781 * 1 2 3 25 25 H 1.08998 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08987 * 109.47319 * 239.99472 * 2 1 3 27 27 H 1.09004 * 109.46525 * 119.99219 * 2 1 3 28 28 H 0.97002 * 120.00541 * 180.02562 * 7 6 5 29 29 H 0.96996 * 120.00288 * 0.02562 * 10 8 7 30 30 H 1.08994 * 109.46957 * 66.33318 * 13 11 10 31 31 H 1.09002 * 109.47065 * 186.34089 * 13 11 10 32 32 H 1.09000 * 109.46665 * 306.33574 * 13 11 10 33 33 H 0.97001 * 119.99221 * 355.17115 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2864 2.1412 1.0458 5 7 2.7010 3.3150 0.8360 6 6 2.8362 3.6953 -0.3986 7 7 3.2775 4.9457 -0.8181 8 6 3.6080 5.8837 0.0915 9 8 3.5200 5.6370 1.2787 10 7 4.0361 7.0953 -0.3151 11 6 4.3960 8.1147 0.6736 12 1 4.8516 7.6357 1.5401 13 6 3.1379 8.8683 1.1102 14 6 5.3751 9.0836 0.0625 15 1 5.6278 9.0078 -0.9848 16 6 5.9486 10.0670 0.8404 17 7 6.5239 11.1037 0.2714 18 14 5.9151 9.9229 2.7026 19 1 6.5989 11.0968 3.3022 20 1 4.5064 9.8784 3.1703 21 1 6.6133 8.6790 3.1154 22 16 2.3736 2.4036 -1.4245 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8898 27 1 1.8933 -0.5137 0.8901 28 1 3.3474 5.1427 -1.7653 29 1 4.1060 7.2923 -1.2623 30 1 2.4783 8.1906 1.6521 31 1 3.4183 9.6985 1.7585 32 1 2.6210 9.2525 0.2308 33 1 6.6070 11.1427 -0.6943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153541986.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:48 Heat of formation + Delta-G solvation = 10.075067 kcal Electronic energy + Delta-G solvation = -17964.107900 eV Core-core repulsion = 14958.483152 eV Total energy + Delta-G solvation = -3005.624748 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42648 -41.13982 -37.39780 -36.28764 -35.04538 -34.47512 -31.78540 -30.29150 -27.33857 -26.86280 -24.85459 -23.47263 -22.06389 -21.00772 -20.99186 -19.68503 -18.83993 -18.26142 -17.31662 -16.78226 -16.10878 -15.77489 -15.67852 -15.15220 -14.87737 -14.59202 -14.41273 -14.34669 -13.75751 -13.59444 -13.39183 -12.69833 -12.48693 -12.38601 -12.13711 -11.99175 -11.81156 -11.64355 -11.37495 -11.18244 -10.87881 -10.59201 -10.49422 -10.20998 -9.72236 -8.82938 -6.46984 -0.55460 -0.53023 0.12431 1.38805 1.45594 1.49031 1.50855 1.70385 2.10507 2.39373 2.87704 2.99230 3.33602 3.76809 4.07260 4.32058 4.40039 4.44437 4.68031 4.73941 4.78525 4.91376 5.00598 5.02376 5.11245 5.33502 5.36097 5.47303 5.52057 5.78053 5.99151 6.49923 6.86705 7.24719 7.38646 7.68122 8.58123 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047728 B = 0.003853 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.521918 B = 7264.956529 C = 7561.958951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C 0.004 3.996 4 N -0.271 5.271 5 N -0.327 5.327 6 C 0.224 3.776 7 N -0.624 5.624 8 C 0.690 3.310 9 O -0.583 6.583 10 N -0.703 5.703 11 C 0.263 3.737 12 H 0.022 0.978 13 C -0.155 4.155 14 C -0.613 4.613 15 H 0.047 0.953 16 C -0.001 4.001 17 N -0.925 5.925 18 Si 1.069 2.931 19 H -0.280 1.280 20 H -0.248 1.248 21 H -0.277 1.277 22 S 0.192 5.808 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.104 0.896 28 H 0.439 0.561 29 H 0.407 0.593 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -22.065 -8.642 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.279 4.279 4 N -0.107 5.107 5 N -0.171 5.171 6 C -0.147 4.147 7 N -0.280 5.280 8 C 0.387 3.613 9 O -0.458 6.458 10 N -0.357 5.357 11 C 0.158 3.842 12 H 0.039 0.961 13 C -0.213 4.213 14 C -0.651 4.651 15 H 0.065 0.935 16 C -0.202 4.202 17 N -0.559 5.559 18 Si 0.892 3.108 19 H -0.205 1.205 20 H -0.173 1.173 21 H -0.203 1.203 22 S 0.432 5.568 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.114 0.886 26 H 0.140 0.860 27 H 0.122 0.878 28 H 0.281 0.719 29 H 0.242 0.758 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.404 -21.207 -5.861 24.782 hybrid contribution 0.125 0.075 -2.324 2.329 sum -11.279 -21.132 -8.186 25.314 Atomic orbital electron populations 1.21806 0.92462 1.04134 1.02142 1.20442 0.97306 0.83878 1.06458 1.30826 1.03978 1.04469 0.88627 1.71397 1.13128 0.98148 1.27999 1.71525 1.19746 1.08706 1.17113 1.25885 1.01291 0.93635 0.93898 1.41843 1.67075 1.08131 1.10988 1.16247 0.78981 0.81082 0.84954 1.91009 1.58871 1.79784 1.16097 1.45225 1.68283 1.10826 1.11351 1.18693 0.92768 0.84641 0.88121 0.96053 1.22404 0.98287 0.99822 1.00805 1.22207 1.28494 1.16993 0.97369 0.93453 1.26706 0.92836 0.90868 1.09809 1.70985 1.45088 1.27213 1.12657 0.83720 0.78959 0.76595 0.71540 1.20528 1.17279 1.20267 1.84177 1.61636 1.02658 1.08377 0.93811 0.91837 0.88633 0.86011 0.87787 0.71949 0.75751 0.94675 0.92279 0.92471 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.90 71.98 0.71 -0.72 16 2 C -0.04 -0.44 6.56 29.85 0.20 -0.25 16 3 C 0.00 0.09 7.05 88.45 0.62 0.71 16 4 N -0.27 -8.84 11.65 -47.68 -0.56 -9.40 16 5 N -0.33 -12.56 9.73 -59.09 -0.58 -13.14 16 6 C 0.22 6.77 8.14 179.10 1.46 8.23 16 7 N -0.62 -18.12 5.41 -326.98 -1.77 -19.89 16 8 C 0.69 27.48 8.49 179.05 1.52 29.00 16 9 O -0.58 -29.15 14.69 -3.96 -0.06 -29.21 16 10 N -0.70 -27.70 5.07 -461.42 -2.34 -30.04 16 11 C 0.26 12.57 2.14 44.25 0.09 12.67 16 12 H 0.02 1.14 6.23 -2.39 -0.01 1.13 16 13 C -0.15 -6.90 9.16 71.98 0.66 -6.24 16 14 C -0.61 -32.83 9.00 25.60 0.23 -32.60 16 15 H 0.05 2.63 7.96 -2.91 -0.02 2.61 16 16 C 0.00 -0.04 5.29 84.66 0.45 0.41 16 17 N -0.92 -55.18 13.70 21.45 0.29 -54.89 16 18 Si 1.07 50.73 26.29 68.60 1.80 52.53 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.25 -10.83 5.76 99.48 0.57 -10.26 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 S 0.19 3.42 23.31 -56.49 -1.32 2.10 16 23 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.12 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.44 8.30 8.83 -92.71 -0.82 7.48 16 29 H 0.41 13.29 8.54 -92.71 -0.79 12.50 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 2.68 4.88 -2.39 -0.01 2.67 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 Total: -1.00 -78.26 297.73 0.81 -77.45 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.62 Total: 13.28 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.94 Total: 11.20 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -4.95 Total: -127.36 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.06 Total: -29.21 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 1.80 Total: 52.53 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.32 Total: 2.10 kcal Total: -78.26 0.81 -77.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153541986.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.527 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds