Wall clock time and date at job start Mon Mar 30 2020 01:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21588 * 119.99628 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00297 * 180.02562 * 14 13 3 17 17 C 1.39081 * 120.00441 * 179.97438 * 16 14 13 18 18 N 1.29897 * 125.64982 * 0.02562 * 17 16 14 19 19 N 1.26246 * 117.65182 * 179.97438 * 18 17 16 20 20 C 1.29498 * 116.58895 * 359.97438 * 19 18 17 21 21 C 1.50701 * 126.14216 * 180.02562 * 20 19 18 22 22 S 1.71311 * 125.65763 * 179.71303 * 17 16 14 23 23 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 27 27 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 28 28 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 29 29 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 30 30 H 0.97003 * 119.99842 * 359.97438 * 16 14 13 31 31 H 1.09002 * 109.47122 * 90.02665 * 21 20 19 32 32 H 1.09001 * 109.46813 * 210.02611 * 21 20 19 33 33 H 1.09000 * 109.47221 * 330.02493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 7 0.0783 3.2665 -2.5187 17 6 -1.1781 3.8511 -2.6377 18 7 -2.0897 3.8814 -1.7128 19 7 -3.1810 4.4552 -1.9844 20 6 -3.2887 4.9644 -3.1701 21 6 -4.4881 5.6935 -3.7187 22 16 -1.7771 4.6571 -4.0256 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 3.8292 -0.0558 2.9526 29 1 2.2719 2.1232 -1.9978 30 1 0.6978 3.2922 -3.2647 31 1 -4.3955 6.7582 -3.5044 32 1 -4.5427 5.5433 -4.7970 33 1 -5.3937 5.3062 -3.2517 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155566502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:59 Heat of formation + Delta-G solvation = 40.956258 kcal Electronic energy + Delta-G solvation = -18349.616514 eV Core-core repulsion = 15345.330875 eV Total energy + Delta-G solvation = -3004.285639 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.15320 -39.57438 -35.87136 -34.49637 -32.71578 -32.16435 -30.83498 -28.28029 -26.91274 -25.07598 -23.16196 -21.99883 -19.99009 -19.65425 -19.27746 -17.67402 -17.27417 -16.09307 -15.93327 -15.16001 -14.79663 -14.29598 -14.20689 -13.54670 -13.33852 -13.18706 -12.79006 -12.67721 -12.36281 -11.63970 -11.27755 -11.05677 -10.98954 -10.81019 -10.54781 -10.36604 -10.21206 -10.07833 -9.64123 -9.60252 -9.34579 -9.08871 -8.57049 -8.53657 -7.89804 -6.15429 -4.25524 0.55348 0.55935 1.19125 2.73668 2.77923 3.23523 3.29422 3.30277 3.79402 4.17257 4.29882 4.58125 4.92402 5.15321 5.17604 5.20643 5.46659 5.69106 6.19538 6.40418 6.47170 6.60352 6.75829 7.05521 7.25067 7.31307 7.39458 7.60100 7.77248 7.87677 8.14120 8.58550 8.72958 8.84906 9.12414 9.41764 10.89933 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042911 B = 0.004098 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.354440 B = 6830.374020 C = 7163.254063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.682 3.318 15 O -0.525 6.525 16 N -0.641 5.641 17 C 0.270 3.730 18 N -0.271 5.271 19 N -0.224 5.224 20 C -0.010 4.010 21 C -0.065 4.065 22 S 0.075 5.925 23 H 0.022 0.978 24 H 0.051 0.949 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.101 0.899 28 H 0.266 0.734 29 H 0.386 0.614 30 H 0.416 0.584 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 7.983 -15.530 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.365 5.365 14 C 0.380 3.620 15 O -0.395 6.395 16 N -0.295 5.295 17 C -0.102 4.102 18 N -0.115 5.115 19 N -0.061 5.061 20 C -0.293 4.293 21 C -0.126 4.126 22 S 0.313 5.687 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.218 0.782 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.184 7.651 -14.006 18.413 hybrid contribution 1.784 -0.099 -0.679 1.911 sum -7.400 7.551 -14.684 18.095 Atomic orbital electron populations 1.21826 0.98135 0.98061 1.01379 1.21969 0.92742 0.99700 1.02322 1.18804 0.94146 0.88948 0.79558 0.92988 1.21152 0.90429 1.39608 1.06378 0.92070 1.24880 0.98685 0.94723 0.95315 1.69888 1.35290 1.37347 1.09166 0.86486 0.84668 0.78312 0.77487 1.20177 1.21085 1.20164 1.45861 1.12635 1.58437 1.19572 1.16221 0.84319 0.79579 0.81888 1.91068 1.50860 1.61274 1.36329 1.42519 1.11816 1.57283 1.17915 1.25680 0.92877 0.98289 0.93369 1.71594 0.96112 1.19067 1.24746 1.71427 1.13665 1.07370 1.13631 1.29789 0.99321 1.06961 0.93277 1.20291 0.92036 0.99392 1.00875 1.84589 1.13386 1.54181 1.16579 0.95854 0.92955 0.94460 0.95005 0.88134 0.92383 0.78155 0.74739 0.89479 0.90010 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.12 2.24 -69.08 -0.15 6.96 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.42 11.31 55.43 0.63 -23.80 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.71 -14.31 5.03 -59.81 -0.30 -14.61 16 14 C 0.68 13.81 7.10 -86.93 -0.62 13.19 16 15 O -0.52 -12.99 12.16 5.29 0.06 -12.92 16 16 N -0.64 -9.84 5.41 -17.32 -0.09 -9.93 16 17 C 0.27 4.31 8.14 -87.05 -0.71 3.60 16 18 N -0.27 -5.30 9.73 29.97 0.29 -5.01 16 19 N -0.22 -3.80 11.65 33.58 0.39 -3.41 16 20 C -0.01 -0.13 7.80 -13.26 -0.10 -0.23 16 21 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 22 S 0.07 0.81 23.31 -107.50 -2.51 -1.70 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 25 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 2.69 5.96 -51.93 -0.31 2.38 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.42 8.55 -40.82 -0.35 6.07 16 30 H 0.42 4.46 8.84 -40.82 -0.36 4.10 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -33.45 294.38 -7.31 -40.76 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.77 Total: 6.01 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -1.43 Total: 4.90 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.92 Total: -56.75 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.06 Total: -12.92 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.45 -7.31 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155566502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.712 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds