Wall clock time and date at job start Mon Mar 30 2020 01:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21588 * 119.99628 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00297 * 180.02562 * 14 13 3 17 17 C 1.39081 * 120.00441 * 179.97438 * 16 14 13 18 18 N 1.29897 * 125.64982 * 0.02562 * 17 16 14 19 19 N 1.26246 * 117.65182 * 179.97438 * 18 17 16 20 20 C 1.29498 * 116.58895 * 359.97438 * 19 18 17 21 21 C 1.50701 * 126.14216 * 180.02562 * 20 19 18 22 22 S 1.71311 * 125.65763 * 179.71303 * 17 16 14 23 23 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 27 27 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 28 28 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 29 29 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 30 30 H 0.97003 * 119.99842 * 359.97438 * 16 14 13 31 31 H 1.09002 * 109.47122 * 90.02665 * 21 20 19 32 32 H 1.09001 * 109.46813 * 210.02611 * 21 20 19 33 33 H 1.09000 * 109.47221 * 330.02493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 7 0.0783 3.2665 -2.5187 17 6 -1.1781 3.8511 -2.6377 18 7 -2.0897 3.8814 -1.7128 19 7 -3.1810 4.4552 -1.9844 20 6 -3.2887 4.9644 -3.1701 21 6 -4.4881 5.6935 -3.7187 22 16 -1.7771 4.6571 -4.0256 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 3.8292 -0.0558 2.9526 29 1 2.2719 2.1232 -1.9978 30 1 0.6978 3.2922 -3.2647 31 1 -4.3955 6.7582 -3.5044 32 1 -4.5427 5.5433 -4.7970 33 1 -5.3937 5.3062 -3.2517 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155566502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:58 Heat of formation + Delta-G solvation = 15.575201 kcal Electronic energy + Delta-G solvation = -18350.717120 eV Core-core repulsion = 15345.330875 eV Total energy + Delta-G solvation = -3005.386245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.35267 -41.09370 -37.51351 -36.09689 -34.40454 -33.41475 -32.56639 -29.54615 -28.63440 -26.22523 -24.99454 -23.44041 -21.66325 -20.92759 -20.84083 -19.07715 -18.58773 -17.70313 -17.35094 -16.93329 -16.30558 -15.98428 -15.26994 -15.09445 -14.57880 -14.38434 -14.20924 -13.82097 -13.54987 -13.37588 -13.18619 -12.91028 -12.65625 -12.32520 -12.21951 -12.07715 -11.68868 -11.57381 -11.32407 -11.07894 -10.78016 -10.53707 -10.51621 -9.94434 -9.54753 -8.15666 -6.33464 -0.48400 -0.46174 0.17248 1.44959 1.48413 1.52610 1.56385 1.57739 2.25150 2.42054 3.03709 3.14562 3.50219 3.87853 4.26639 4.47211 4.54328 4.72173 4.73015 4.80613 4.96203 5.04720 5.16988 5.21052 5.41084 5.45397 5.58920 5.61676 5.81117 6.03727 6.14742 6.73525 7.05805 7.33893 7.57449 7.75701 8.89882 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042911 B = 0.004098 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.354440 B = 6830.374020 C = 7163.254063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.706 5.706 14 C 0.686 3.314 15 O -0.576 6.576 16 N -0.625 5.625 17 C 0.226 3.774 18 N -0.329 5.329 19 N -0.278 5.278 20 C 0.000 4.000 21 C -0.069 4.069 22 S 0.188 5.812 23 H 0.044 0.956 24 H 0.022 0.978 25 H 0.037 0.963 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.265 0.735 29 H 0.406 0.594 30 H 0.438 0.562 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 9.079 -18.923 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.095 0.905 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.360 5.360 14 C 0.383 3.617 15 O -0.450 6.450 16 N -0.282 5.282 17 C -0.146 4.146 18 N -0.173 5.173 19 N -0.114 5.114 20 C -0.283 4.283 21 C -0.130 4.130 22 S 0.427 5.573 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.241 0.759 30 H 0.279 0.721 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.786 8.782 -17.500 21.461 hybrid contribution 1.491 -0.294 0.218 1.535 sum -7.295 8.489 -17.282 20.590 Atomic orbital electron populations 1.21642 0.97368 0.98856 0.99933 1.21810 0.93255 0.99239 1.01587 1.18335 0.93727 0.88783 0.79848 0.98422 1.21518 0.90953 1.39334 1.06842 0.90525 1.25789 1.03425 0.94319 0.94955 1.70056 1.37242 1.38285 1.09735 0.85385 0.78868 0.78426 0.77558 1.19677 1.21426 1.18691 1.45405 1.13342 1.58406 1.18835 1.16265 0.83578 0.79271 0.82568 1.91042 1.52223 1.63009 1.38698 1.41934 1.12477 1.56774 1.17044 1.25910 0.92620 1.00044 0.95985 1.71521 0.97535 1.20432 1.27821 1.71397 1.13593 1.10124 1.16308 1.30834 1.01277 1.03922 0.92280 1.20648 0.89878 0.99844 1.02621 1.84130 1.10499 1.50961 1.11722 0.93711 0.95920 0.94381 0.93561 0.90769 0.92562 0.75891 0.72090 0.87344 0.86689 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 3 C 0.30 15.18 2.24 44.24 0.10 15.28 16 4 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 5 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16 6 H 0.08 3.64 7.74 -2.92 -0.02 3.61 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -52.34 11.31 21.45 0.24 -52.10 16 9 Si 0.97 41.45 29.54 68.60 2.03 43.47 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 13 N -0.71 -28.58 5.03 -461.41 -2.32 -30.90 16 14 C 0.69 28.35 7.10 179.06 1.27 29.63 16 15 O -0.58 -29.99 12.16 -3.99 -0.05 -30.04 16 16 N -0.63 -18.83 5.41 -326.97 -1.77 -20.60 16 17 C 0.23 7.08 8.14 179.10 1.46 8.54 16 18 N -0.33 -13.17 9.73 -59.09 -0.58 -13.75 16 19 N -0.28 -9.43 11.65 -47.69 -0.56 -9.99 16 20 C 0.00 0.00 7.80 88.45 0.69 0.69 16 21 C -0.07 -0.71 10.51 71.24 0.75 0.04 16 22 S 0.19 3.45 23.31 -56.49 -1.32 2.14 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.02 1.17 7.84 -2.39 -0.02 1.15 16 25 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 4.11 5.96 -2.39 -0.01 4.10 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.41 13.04 8.55 -92.71 -0.79 12.25 16 30 H 0.44 8.56 8.84 -92.71 -0.82 7.74 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -78.13 294.38 0.96 -77.17 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -0.45 Total: 18.25 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 5.72 Total: 16.35 kcal Atomic # 7 Polarization: -122.36 SS G_CDS: -4.98 Total: -127.34 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.32 Total: 2.14 kcal Total: -78.13 0.96 -77.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155566502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.746 kcal (2) G-P(sol) polarization free energy of solvation -78.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds