Wall clock time and date at job start Mon Mar 30 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 H 1.09004 * 109.47273 * 305.56239 * 3 2 1 5 5 C 1.50694 * 109.47053 * 185.55746 * 3 2 1 6 6 H 1.08002 * 120.00097 * 245.60248 * 5 3 2 7 7 C 1.37871 * 120.00196 * 65.60633 * 5 3 2 8 8 N 1.31516 * 120.00383 * 196.28673 * 7 5 3 9 9 Si 1.86797 * 120.00169 * 16.28802 * 7 5 3 10 10 H 1.48502 * 109.47413 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47288 * 300.00168 * 9 7 5 12 12 H 1.48505 * 109.46984 * 59.99932 * 9 7 5 13 13 N 1.46505 * 109.46809 * 65.55699 * 3 2 1 14 14 C 1.34776 * 120.00032 * 274.99867 * 13 3 2 15 15 O 1.21587 * 119.99746 * 0.02562 * 14 13 3 16 16 N 1.34769 * 120.00081 * 180.02562 * 14 13 3 17 17 C 1.39084 * 120.00077 * 180.02562 * 16 14 13 18 18 N 1.29882 * 125.65307 * 0.02562 * 17 16 14 19 19 N 1.26250 * 117.65688 * 179.97438 * 18 17 16 20 20 C 1.29502 * 116.58720 * 0.02562 * 19 18 17 21 21 C 1.50700 * 126.14598 * 180.02562 * 20 19 18 22 22 S 1.71312 * 125.65324 * 179.71597 * 17 16 14 23 23 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46918 * 299.99516 * 1 2 3 25 25 H 1.08994 * 109.47444 * 59.99450 * 1 2 3 26 26 H 1.09004 * 109.46918 * 240.00484 * 2 1 3 27 27 H 1.08994 * 109.47444 * 120.00550 * 2 1 3 28 28 H 0.97005 * 119.99897 * 354.83549 * 8 7 5 29 29 H 0.96993 * 119.99876 * 95.00498 * 13 3 2 30 30 H 0.97002 * 120.00123 * 359.97438 * 16 14 13 31 31 H 1.09000 * 109.47352 * 89.97275 * 21 20 19 32 32 H 1.09003 * 109.47179 * 209.96967 * 21 20 19 33 33 H 1.09005 * 109.47170 * 329.96977 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9844 -0.8360 5 6 3.5407 1.4447 -0.1376 6 1 4.1568 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4071 0.6861 -1.3144 9 14 3.1039 0.7980 -2.8499 10 1 3.9634 0.2948 -3.9514 11 1 2.0022 -0.1663 -2.6011 12 1 2.5326 2.1149 -3.2304 13 7 1.6639 2.0934 1.2575 14 6 0.4477 2.6599 1.3856 15 8 -0.3374 2.6304 0.4577 16 7 0.1019 3.2591 2.5422 17 6 -1.1533 3.8432 2.6746 18 7 -2.0740 3.8749 1.7590 19 7 -3.1630 4.4472 2.0426 20 6 -3.2595 4.9536 3.2306 21 6 -4.4544 5.6794 3.7931 22 16 -1.7442 4.6337 4.0749 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.9549 0.8551 -0.5318 29 1 2.2902 2.1167 1.9978 30 1 0.7282 3.2823 3.2826 31 1 -5.1193 4.9641 4.2773 32 1 -4.1209 6.4171 4.5230 33 1 -4.9873 6.1821 2.9859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155566587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:01 Heat of formation + Delta-G solvation = 41.266047 kcal Electronic energy + Delta-G solvation = -18432.782636 eV Core-core repulsion = 15428.510430 eV Total energy + Delta-G solvation = -3004.272206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24818 -39.74395 -36.08588 -34.64736 -32.77929 -32.29314 -31.30702 -28.39017 -27.13249 -25.15067 -22.64314 -22.09895 -20.18027 -19.76885 -19.49425 -18.01283 -17.47893 -16.75434 -16.18976 -15.30659 -14.86024 -14.35103 -14.06794 -13.49012 -13.39147 -13.27594 -12.85875 -12.71652 -12.59141 -12.37504 -11.88788 -11.13929 -10.91570 -10.74346 -10.60803 -10.45215 -10.20595 -9.90835 -9.68585 -9.62463 -9.45410 -9.09787 -8.68164 -8.38319 -8.16408 -6.62844 -4.27325 0.46615 0.47826 1.11462 2.64491 2.65439 3.38347 3.45432 3.59479 3.62690 4.09872 4.38625 4.43135 4.83801 5.06000 5.12846 5.14753 5.39992 5.62921 6.06966 6.08528 6.10176 6.24131 6.50987 6.75845 6.83851 6.91767 7.05406 7.34490 7.36700 7.62114 8.18586 8.39662 8.64929 8.74384 8.96488 9.41822 10.78325 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.004426 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.182561 B = 6325.063657 C = 6585.939877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.140 4.140 3 C 0.264 3.736 4 H 0.044 0.956 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.041 3.959 8 N -0.896 5.896 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.706 5.706 14 C 0.684 3.316 15 O -0.528 6.528 16 N -0.640 5.640 17 C 0.267 3.733 18 N -0.271 5.271 19 N -0.225 5.225 20 C -0.008 4.008 21 C -0.065 4.065 22 S 0.080 5.920 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.269 0.731 29 H 0.391 0.609 30 H 0.417 0.583 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.756 7.701 14.339 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.161 3.839 4 H 0.062 0.938 5 C -0.656 4.656 6 H 0.080 0.920 7 C -0.166 4.166 8 N -0.529 5.529 9 Si 0.866 3.134 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.359 5.359 14 C 0.382 3.618 15 O -0.398 6.398 16 N -0.295 5.295 17 C -0.105 4.105 18 N -0.115 5.115 19 N -0.062 5.062 20 C -0.291 4.291 21 C -0.127 4.127 22 S 0.318 5.682 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.224 0.776 30 H 0.254 0.746 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.332 6.944 11.461 19.621 hybrid contribution 0.835 0.521 2.486 2.674 sum -13.497 7.466 13.947 20.795 Atomic orbital electron populations 1.21870 0.97167 0.98891 1.02101 1.22394 0.93931 0.99651 1.01945 1.19063 0.95734 0.88348 0.80775 0.93777 1.22067 0.89460 1.49819 1.04252 0.91988 1.25675 0.97512 0.92250 1.01147 1.70890 1.07020 1.40738 1.34275 0.84137 0.75515 0.77921 0.75849 1.20848 1.19359 1.20478 1.45568 1.12621 1.58511 1.19162 1.16210 0.84219 0.79498 0.81920 1.91058 1.50321 1.61414 1.37049 1.42419 1.11847 1.57353 1.17831 1.25649 0.92778 0.98673 0.93376 1.71581 0.95907 1.18977 1.25032 1.71432 1.13829 1.07447 1.13448 1.29814 0.99258 1.06778 0.93287 1.20303 0.91634 0.99177 1.01548 1.84630 1.13299 1.54539 1.15773 0.95075 0.93478 0.92818 0.91072 0.93052 0.92093 0.77637 0.74584 0.89425 0.89944 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.53 37.16 0.32 -2.68 16 2 C -0.14 -3.12 5.28 -26.73 -0.14 -3.26 16 3 C 0.26 6.22 1.82 -69.08 -0.13 6.09 16 4 H 0.04 1.15 6.26 -51.93 -0.32 0.82 16 5 C -0.62 -16.34 9.01 -34.45 -0.31 -16.65 16 6 H 0.06 1.70 7.96 -52.49 -0.42 1.28 16 7 C 0.04 1.14 5.32 -17.82 -0.09 1.04 16 8 N -0.90 -26.34 13.70 55.43 0.76 -25.58 16 9 Si 1.04 25.01 26.27 -169.99 -4.47 20.55 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.04 5.67 56.52 0.32 -5.71 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.71 -13.80 5.03 -59.81 -0.30 -14.10 16 14 C 0.68 13.27 7.12 -86.93 -0.62 12.66 16 15 O -0.53 -12.37 12.16 5.29 0.06 -12.31 16 16 N -0.64 -9.46 5.41 -17.32 -0.09 -9.56 16 17 C 0.27 4.10 8.14 -87.06 -0.71 3.39 16 18 N -0.27 -5.09 9.73 29.97 0.29 -4.80 16 19 N -0.23 -3.66 11.65 33.58 0.39 -3.27 16 20 C -0.01 -0.10 7.80 -13.26 -0.10 -0.20 16 21 C -0.07 -0.43 10.51 36.01 0.38 -0.05 16 22 S 0.08 0.82 23.31 -107.50 -2.51 -1.68 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 25 H 0.05 1.19 7.88 -51.93 -0.41 0.78 16 26 H 0.07 1.65 4.74 -51.93 -0.25 1.41 16 27 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.27 7.79 8.73 -40.82 -0.36 7.43 16 29 H 0.39 6.51 8.54 -40.82 -0.35 6.16 16 30 H 0.42 4.32 8.84 -40.82 -0.36 3.96 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -34.26 289.93 -6.64 -40.91 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.75 Total: 5.13 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.41 Total: 0.34 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 1.05 Total: -57.31 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.06 Total: -12.31 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.47 Total: 20.55 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.26 -6.64 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155566587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.173 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds