Wall clock time and date at job start Mon Mar 30 2020 01:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47102 * 2 1 4 4 H 1.09004 * 109.47273 * 305.56239 * 3 2 1 5 5 C 1.50694 * 109.47053 * 185.55746 * 3 2 1 6 6 H 1.08002 * 120.00097 * 245.60248 * 5 3 2 7 7 C 1.37871 * 120.00196 * 65.60633 * 5 3 2 8 8 N 1.31516 * 120.00383 * 196.28673 * 7 5 3 9 9 Si 1.86797 * 120.00169 * 16.28802 * 7 5 3 10 10 H 1.48502 * 109.47413 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47288 * 300.00168 * 9 7 5 12 12 H 1.48505 * 109.46984 * 59.99932 * 9 7 5 13 13 N 1.46505 * 109.46809 * 65.55699 * 3 2 1 14 14 C 1.34776 * 120.00032 * 274.99867 * 13 3 2 15 15 O 1.21587 * 119.99746 * 0.02562 * 14 13 3 16 16 N 1.34769 * 120.00081 * 180.02562 * 14 13 3 17 17 C 1.39084 * 120.00077 * 180.02562 * 16 14 13 18 18 N 1.29882 * 125.65307 * 0.02562 * 17 16 14 19 19 N 1.26250 * 117.65688 * 179.97438 * 18 17 16 20 20 C 1.29502 * 116.58720 * 0.02562 * 19 18 17 21 21 C 1.50700 * 126.14598 * 180.02562 * 20 19 18 22 22 S 1.71312 * 125.65324 * 179.71597 * 17 16 14 23 23 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46918 * 299.99516 * 1 2 3 25 25 H 1.08994 * 109.47444 * 59.99450 * 1 2 3 26 26 H 1.09004 * 109.46918 * 240.00484 * 2 1 3 27 27 H 1.08994 * 109.47444 * 120.00550 * 2 1 3 28 28 H 0.97005 * 119.99897 * 354.83549 * 8 7 5 29 29 H 0.96993 * 119.99876 * 95.00498 * 13 3 2 30 30 H 0.97002 * 120.00123 * 359.97438 * 16 14 13 31 31 H 1.09000 * 109.47352 * 89.97275 * 21 20 19 32 32 H 1.09003 * 109.47179 * 209.96967 * 21 20 19 33 33 H 1.09005 * 109.47170 * 329.96977 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9844 -0.8360 5 6 3.5407 1.4447 -0.1376 6 1 4.1568 1.8042 0.6734 7 6 4.1272 0.9880 -1.2987 8 7 5.4071 0.6861 -1.3144 9 14 3.1039 0.7980 -2.8499 10 1 3.9634 0.2948 -3.9514 11 1 2.0022 -0.1663 -2.6011 12 1 2.5326 2.1149 -3.2304 13 7 1.6639 2.0934 1.2575 14 6 0.4477 2.6599 1.3856 15 8 -0.3374 2.6304 0.4577 16 7 0.1019 3.2591 2.5422 17 6 -1.1533 3.8432 2.6746 18 7 -2.0740 3.8749 1.7590 19 7 -3.1630 4.4472 2.0426 20 6 -3.2595 4.9536 3.2306 21 6 -4.4544 5.6794 3.7931 22 16 -1.7442 4.6337 4.0749 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 5.9549 0.8551 -0.5318 29 1 2.2902 2.1167 1.9978 30 1 0.7282 3.2823 3.2826 31 1 -5.1193 4.9641 4.2773 32 1 -4.1209 6.4171 4.5230 33 1 -4.9873 6.1821 2.9859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155566587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:01 Heat of formation + Delta-G solvation = 14.547967 kcal Electronic energy + Delta-G solvation = -18433.941219 eV Core-core repulsion = 15428.510430 eV Total energy + Delta-G solvation = -3005.430789 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.39148 -41.18694 -37.67094 -36.16096 -34.55119 -33.61161 -32.78727 -29.64055 -28.76029 -26.21521 -24.38984 -23.55956 -21.77520 -21.03531 -20.95015 -19.69936 -18.78045 -18.15514 -17.43813 -16.91274 -16.31542 -15.74378 -15.24923 -15.11841 -14.65430 -14.46980 -14.39029 -14.19025 -13.92738 -13.65685 -13.38982 -12.74612 -12.54590 -12.40182 -12.27760 -11.82184 -11.71928 -11.42802 -11.34396 -11.10737 -10.82866 -10.54808 -10.49579 -10.05464 -9.66297 -8.81084 -6.45762 -0.51823 -0.49129 0.15033 1.42971 1.45816 1.50638 1.52664 1.69908 2.16735 2.39747 2.93371 3.00194 3.44471 3.82256 4.24074 4.29889 4.37518 4.49414 4.71779 4.78084 4.79604 4.93940 5.07566 5.15708 5.16145 5.24206 5.46220 5.52872 5.59124 5.81520 6.00673 6.51702 6.91015 7.26678 7.44256 7.71311 8.59516 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040559 B = 0.004426 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.182561 B = 6325.063657 C = 6585.939877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.270 3.730 4 H 0.021 0.979 5 C -0.611 4.611 6 H 0.046 0.954 7 C -0.001 4.001 8 N -0.927 5.927 9 Si 1.066 2.934 10 H -0.281 1.281 11 H -0.244 1.244 12 H -0.278 1.278 13 N -0.704 5.704 14 C 0.689 3.311 15 O -0.570 6.570 16 N -0.626 5.626 17 C 0.225 3.775 18 N -0.325 5.325 19 N -0.277 5.277 20 C 0.002 3.998 21 C -0.070 4.070 22 S 0.185 5.815 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.405 0.595 30 H 0.437 0.563 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.581 8.453 16.680 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.039 0.961 5 C -0.649 4.649 6 H 0.064 0.936 7 C -0.202 4.202 8 N -0.562 5.562 9 Si 0.889 3.111 10 H -0.207 1.207 11 H -0.169 1.169 12 H -0.204 1.204 13 N -0.358 5.358 14 C 0.386 3.614 15 O -0.444 6.444 16 N -0.283 5.283 17 C -0.147 4.147 18 N -0.169 5.169 19 N -0.113 5.113 20 C -0.281 4.281 21 C -0.131 4.131 22 S 0.424 5.576 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.240 0.760 30 H 0.278 0.722 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.168 7.724 13.891 22.672 hybrid contribution 1.291 0.457 1.992 2.417 sum -14.878 8.181 15.883 23.249 Atomic orbital electron populations 1.21726 0.95911 1.00087 1.01084 1.22274 0.94887 0.98363 1.01881 1.18710 0.93538 0.89361 0.81877 0.96124 1.22242 0.91076 1.48193 1.03383 0.93586 1.26675 0.97673 0.92154 1.03701 1.70981 1.07940 1.43139 1.34095 0.83771 0.75237 0.78566 0.73484 1.20707 1.16878 1.20370 1.45200 1.13445 1.58716 1.18450 1.16190 0.83383 0.79159 0.82632 1.91032 1.51417 1.62905 1.39072 1.41897 1.12501 1.56869 1.17032 1.25865 0.92508 1.00380 0.95900 1.71506 0.97239 1.20236 1.27888 1.71402 1.13770 1.10085 1.16021 1.30822 1.01074 1.03834 0.92340 1.20654 0.90141 0.99940 1.02326 1.84223 1.10620 1.51527 1.11211 0.92612 0.93917 0.94487 0.92006 0.92185 0.93081 0.75993 0.72158 0.87259 0.86796 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.53 71.98 0.61 -4.73 16 2 C -0.14 -5.90 5.28 30.60 0.16 -5.74 16 3 C 0.27 12.72 1.82 44.24 0.08 12.80 16 4 H 0.02 1.09 6.26 -2.38 -0.01 1.08 16 5 C -0.61 -32.58 9.01 25.60 0.23 -32.35 16 6 H 0.05 2.55 7.96 -2.91 -0.02 2.53 16 7 C 0.00 -0.04 5.32 84.65 0.45 0.41 16 8 N -0.93 -55.33 13.70 21.45 0.29 -55.04 16 9 Si 1.07 50.66 26.27 68.60 1.80 52.46 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.24 -10.62 5.67 99.48 0.56 -10.05 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 N -0.70 -27.31 5.03 -461.40 -2.32 -29.63 16 14 C 0.69 26.63 7.12 179.06 1.28 27.91 16 15 O -0.57 -27.18 12.16 -3.99 -0.05 -27.23 16 16 N -0.63 -17.88 5.41 -326.98 -1.77 -19.65 16 17 C 0.22 6.65 8.14 179.10 1.46 8.11 16 18 N -0.33 -12.22 9.73 -59.09 -0.58 -12.79 16 19 N -0.28 -8.84 11.65 -47.68 -0.56 -9.39 16 20 C 0.00 0.04 7.80 88.45 0.69 0.73 16 21 C -0.07 -0.64 10.51 71.24 0.75 0.11 16 22 S 0.19 3.21 23.31 -56.49 -1.32 1.89 16 23 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.04 1.77 5.63 -2.38 -0.01 1.76 16 25 H 0.04 1.61 7.88 -2.39 -0.02 1.60 16 26 H 0.06 2.80 4.74 -2.38 -0.01 2.79 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.26 15.44 8.73 -92.70 -0.81 14.63 16 29 H 0.40 13.18 8.54 -92.71 -0.79 12.39 16 30 H 0.44 8.23 8.84 -92.71 -0.82 7.41 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -77.18 289.93 0.60 -76.59 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -0.62 Total: 15.55 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 5.71 Total: 7.24 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -4.93 Total: -126.50 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.80 Total: 52.46 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.32 Total: 1.89 kcal Total: -77.18 0.60 -76.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155566587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.133 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds