Wall clock time and date at job start Mon Mar 30 2020 01:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47481 * 2 1 4 4 S 1.81408 * 109.46711 * 119.99978 * 2 1 3 5 5 C 1.76200 * 103.00011 * 294.99398 * 4 2 1 6 6 C 1.35930 * 126.68878 * 179.97438 * 5 4 2 7 7 N 1.33271 * 108.84906 * 179.76422 * 6 5 4 8 8 N 1.28731 * 110.01471 * 0.24482 * 7 6 5 9 9 N 1.36333 * 126.68525 * 0.18149 * 5 4 2 10 10 H 0.96993 * 126.85023 * 359.97438 * 9 5 4 11 11 C 1.50704 * 109.46929 * 239.99549 * 2 1 3 12 12 O 1.21280 * 119.99885 * 265.00287 * 11 2 1 13 13 N 1.34771 * 119.99764 * 85.00297 * 11 2 1 14 14 C 1.46500 * 120.00121 * 0.02562 * 13 11 2 15 15 C 1.46501 * 120.00029 * 179.97438 * 13 11 2 16 16 C 1.50704 * 109.46920 * 89.99824 * 15 13 11 17 17 H 1.08003 * 119.99720 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00054 * 179.97438 * 16 15 13 19 19 N 1.31519 * 120.00247 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47036 * 90.00270 * 20 18 16 22 22 H 1.48501 * 109.47032 * 210.00481 * 20 18 16 23 23 H 1.48500 * 109.46716 * 329.99987 * 20 18 16 24 24 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 300.00232 * 1 2 3 26 26 H 1.08996 * 109.46696 * 59.99925 * 1 2 3 27 27 H 1.08002 * 125.57818 * 0.03618 * 6 5 4 28 28 H 1.09003 * 109.47387 * 90.00133 * 14 13 11 29 29 H 1.09007 * 109.46949 * 209.99872 * 14 13 11 30 30 H 1.09000 * 109.46796 * 329.99641 * 14 13 11 31 31 H 1.08998 * 109.47767 * 210.00190 * 15 13 11 32 32 H 1.08999 * 109.47470 * 330.00394 * 15 13 11 33 33 H 0.96996 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 1.5827 0.1847 2.7923 6 6 1.7796 -0.0122 4.1227 7 7 1.2177 0.9925 4.7944 8 7 0.6683 1.8183 3.9738 9 7 0.8717 1.3415 2.6701 10 1 0.5702 1.7546 1.8460 11 6 2.0323 -0.7105 -1.2305 12 8 2.3207 -1.8873 -1.1759 13 7 2.1610 -0.0382 -2.3914 14 6 1.8132 1.3834 -2.4571 15 6 2.6499 -0.7288 -3.5874 16 6 1.4831 -1.3092 -4.3444 17 1 0.4781 -1.1765 -3.9720 18 6 1.6987 -2.0086 -5.5129 19 7 2.9226 -2.1697 -5.9666 20 14 0.2525 -2.7274 -6.4516 21 1 -0.2458 -1.7302 -7.4325 22 1 0.6877 -3.9527 -7.1689 23 1 -0.8341 -3.0709 -5.4994 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 2.3089 -0.8441 4.5633 28 1 2.6923 1.9838 -2.2229 29 1 1.4644 1.6260 -3.4609 30 1 1.0241 1.5980 -1.7365 31 1 3.1804 -0.0210 -4.2244 32 1 3.3269 -1.5306 -3.2929 33 1 3.0743 -2.6620 -6.7884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156022436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:53 Heat of formation + Delta-G solvation = 66.408326 kcal Electronic energy + Delta-G solvation = -18202.346767 eV Core-core repulsion = 15199.164812 eV Total energy + Delta-G solvation = -3003.181955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04841 -39.45027 -35.16192 -34.15886 -33.00239 -32.31457 -30.72942 -28.02277 -26.29251 -24.74293 -23.69653 -22.87567 -22.16294 -19.62621 -18.72027 -17.03518 -16.78748 -16.65462 -15.73613 -15.46614 -15.02061 -14.68265 -14.51605 -14.19625 -13.59939 -13.32572 -12.67550 -12.35150 -12.32836 -12.24699 -12.11634 -11.94211 -11.40036 -11.34531 -11.14692 -11.02671 -10.72566 -10.52047 -10.29460 -10.04208 -9.80339 -9.34038 -8.56358 -7.95051 -7.80129 -6.17511 -4.23469 0.78595 0.93971 1.57565 2.31337 2.60295 2.96071 3.21578 3.29354 3.32494 3.54541 4.31310 4.44515 4.50503 4.55161 4.67911 4.74243 4.95445 5.10164 5.17868 5.21626 5.38659 5.64796 5.79181 5.86884 5.97819 6.40385 6.77654 7.21085 7.28177 7.76763 7.90415 8.04452 8.06655 8.59179 8.81549 9.42235 10.90694 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.004108 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.979298 B = 6815.041166 C = 6879.073481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.135 4.135 3 H 0.110 0.890 4 S 0.068 5.932 5 C 0.034 3.966 6 C -0.054 4.054 7 N -0.224 5.224 8 N -0.071 5.071 9 N -0.476 5.476 10 H 0.441 0.559 11 C 0.528 3.472 12 O -0.518 6.518 13 N -0.589 5.589 14 C 0.075 3.925 15 C 0.246 3.754 16 C -0.532 4.532 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.191 0.809 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 7.809 12.418 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.268 4.268 3 H 0.128 0.872 4 S 0.301 5.699 5 C -0.212 4.212 6 C -0.218 4.218 7 N -0.094 5.094 8 N -0.052 5.052 9 N -0.198 5.198 10 H 0.289 0.711 11 C 0.311 3.689 12 O -0.394 6.394 13 N -0.321 5.321 14 C -0.069 4.069 15 C 0.127 3.873 16 C -0.571 4.571 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.208 0.792 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.735 7.203 13.239 15.318 hybrid contribution -1.262 0.428 -1.941 2.355 sum -3.998 7.631 11.298 14.208 Atomic orbital electron populations 1.22123 0.90404 1.05453 1.02742 1.24001 1.01650 1.04073 0.97065 0.87176 1.86735 1.66876 1.25787 0.90498 1.24752 1.00932 0.93179 1.02365 1.23000 1.08970 1.02175 0.87633 1.74220 1.07105 1.01434 1.26642 1.81849 1.21783 1.18722 0.82847 1.48673 1.41919 1.18024 1.11152 0.71108 1.19038 0.79765 0.87020 0.83079 1.90752 1.49697 1.14874 1.84098 1.48089 1.63464 1.09908 1.10650 1.21797 0.99304 0.82240 1.03558 1.19411 0.95464 0.92873 0.79551 1.21370 0.93258 1.35090 1.07369 0.92384 1.24932 0.96013 0.95764 0.97246 1.69921 1.19650 1.41220 1.22268 0.86477 0.82352 0.78738 0.79756 1.20581 1.20949 1.19854 0.89401 0.92527 0.89728 0.79154 0.93241 0.90006 0.92510 0.94523 0.93503 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.67 37.16 0.32 -1.25 16 2 C -0.14 -1.69 1.82 -27.88 -0.05 -1.74 16 3 H 0.11 1.07 6.89 -51.93 -0.36 0.71 16 4 S 0.07 0.85 20.86 -107.50 -2.24 -1.39 16 5 C 0.03 0.38 7.06 -16.38 -0.12 0.26 16 6 C -0.05 -0.62 11.86 -17.76 -0.21 -0.83 16 7 N -0.22 -2.99 12.32 30.26 0.37 -2.61 16 8 N -0.07 -0.92 13.90 60.35 0.84 -0.08 16 9 N -0.48 -5.00 6.62 31.46 0.21 -4.79 16 10 H 0.44 3.45 6.75 -182.45 -1.23 2.22 16 11 C 0.53 9.69 6.80 -10.99 -0.07 9.62 16 12 O -0.52 -11.86 15.72 5.56 0.09 -11.77 16 13 N -0.59 -11.11 2.86 -182.95 -0.52 -11.64 16 14 C 0.08 1.00 9.87 59.85 0.59 1.59 16 15 C 0.25 5.97 5.16 -5.19 -0.03 5.94 16 16 C -0.53 -14.19 9.39 -34.44 -0.32 -14.51 16 17 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.47 5.51 -51.93 -0.29 0.18 16 26 H 0.08 0.84 6.84 -51.93 -0.36 0.49 16 27 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 1.14 8.07 -51.92 -0.42 0.72 16 30 H 0.06 0.57 5.17 -51.93 -0.27 0.30 16 31 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -32.40 297.69 -5.58 -37.98 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.54 Total: -2.10 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 0.01 Total: 0.71 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 1.63 Total: -43.82 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.24 Total: -1.39 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.40 -5.58 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156022436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.385 kcal (2) G-P(sol) polarization free energy of solvation -32.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds