Wall clock time and date at job start Mon Mar 30 2020 01:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47481 * 2 1 4 4 S 1.81408 * 109.46711 * 119.99978 * 2 1 3 5 5 C 1.76200 * 103.00011 * 294.99398 * 4 2 1 6 6 C 1.35930 * 126.68878 * 179.97438 * 5 4 2 7 7 N 1.33271 * 108.84906 * 179.76422 * 6 5 4 8 8 N 1.28731 * 110.01471 * 0.24482 * 7 6 5 9 9 N 1.36333 * 126.68525 * 0.18149 * 5 4 2 10 10 H 0.96993 * 126.85023 * 359.97438 * 9 5 4 11 11 C 1.50704 * 109.46929 * 239.99549 * 2 1 3 12 12 O 1.21280 * 119.99885 * 265.00287 * 11 2 1 13 13 N 1.34771 * 119.99764 * 85.00297 * 11 2 1 14 14 C 1.46500 * 120.00121 * 0.02562 * 13 11 2 15 15 C 1.46501 * 120.00029 * 179.97438 * 13 11 2 16 16 C 1.50704 * 109.46920 * 89.99824 * 15 13 11 17 17 H 1.08003 * 119.99720 * 0.02562 * 16 15 13 18 18 C 1.37873 * 120.00054 * 179.97438 * 16 15 13 19 19 N 1.31519 * 120.00247 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00083 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47036 * 90.00270 * 20 18 16 22 22 H 1.48501 * 109.47032 * 210.00481 * 20 18 16 23 23 H 1.48500 * 109.46716 * 329.99987 * 20 18 16 24 24 H 1.08997 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46825 * 300.00232 * 1 2 3 26 26 H 1.08996 * 109.46696 * 59.99925 * 1 2 3 27 27 H 1.08002 * 125.57818 * 0.03618 * 6 5 4 28 28 H 1.09003 * 109.47387 * 90.00133 * 14 13 11 29 29 H 1.09007 * 109.46949 * 209.99872 * 14 13 11 30 30 H 1.09000 * 109.46796 * 329.99641 * 14 13 11 31 31 H 1.08998 * 109.47767 * 210.00190 * 15 13 11 32 32 H 1.08999 * 109.47470 * 330.00394 * 15 13 11 33 33 H 0.96996 * 120.00126 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 1.5827 0.1847 2.7923 6 6 1.7796 -0.0122 4.1227 7 7 1.2177 0.9925 4.7944 8 7 0.6683 1.8183 3.9738 9 7 0.8717 1.3415 2.6701 10 1 0.5702 1.7546 1.8460 11 6 2.0323 -0.7105 -1.2305 12 8 2.3207 -1.8873 -1.1759 13 7 2.1610 -0.0382 -2.3914 14 6 1.8132 1.3834 -2.4571 15 6 2.6499 -0.7288 -3.5874 16 6 1.4831 -1.3092 -4.3444 17 1 0.4781 -1.1765 -3.9720 18 6 1.6987 -2.0086 -5.5129 19 7 2.9226 -2.1697 -5.9666 20 14 0.2525 -2.7274 -6.4516 21 1 -0.2458 -1.7302 -7.4325 22 1 0.6877 -3.9527 -7.1689 23 1 -0.8341 -3.0709 -5.4994 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 2.3089 -0.8441 4.5633 28 1 2.6923 1.9838 -2.2229 29 1 1.4644 1.6260 -3.4609 30 1 1.0241 1.5980 -1.7365 31 1 3.1804 -0.0210 -4.2244 32 1 3.3269 -1.5306 -3.2929 33 1 3.0743 -2.6620 -6.7884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156022436.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:53 Heat of formation + Delta-G solvation = 42.983084 kcal Electronic energy + Delta-G solvation = -18203.362562 eV Core-core repulsion = 15199.164812 eV Total energy + Delta-G solvation = -3004.197750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.95330 -40.91230 -36.75030 -35.33341 -34.58214 -33.58600 -31.62626 -29.79514 -27.57079 -26.12996 -24.63668 -24.39341 -23.21054 -20.67873 -19.97254 -18.70486 -18.27973 -17.90225 -16.97556 -16.63891 -16.40867 -16.20591 -15.53618 -15.33222 -14.78369 -14.70247 -14.07519 -13.69614 -13.57218 -13.47983 -13.26105 -13.10743 -13.00213 -12.77430 -12.54224 -12.32405 -12.22168 -12.06425 -11.73695 -11.46257 -10.94872 -10.83480 -10.65069 -9.54534 -8.76917 -8.24239 -6.38683 -0.21684 0.03876 0.62316 1.37193 1.40089 1.40793 1.49289 1.59324 1.79163 2.15649 2.38964 3.06624 3.29031 3.52944 3.67780 3.68713 3.86399 4.08562 4.24970 4.29156 4.47837 4.64104 4.85094 4.94973 5.01388 5.04014 5.19889 5.48907 5.67242 5.75496 6.01772 6.54670 6.70769 6.99380 7.15814 7.34266 8.83096 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.004108 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.979298 B = 6815.041166 C = 6879.073481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.147 0.853 4 S 0.051 5.949 5 C 0.041 3.959 6 C -0.054 4.054 7 N -0.246 5.246 8 N -0.087 5.087 9 N -0.460 5.460 10 H 0.453 0.547 11 C 0.521 3.479 12 O -0.575 6.575 13 N -0.596 5.596 14 C 0.066 3.934 15 C 0.259 3.741 16 C -0.543 4.543 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.271 1.271 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.213 0.787 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.029 0.971 32 H 0.001 0.999 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 9.317 13.054 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.254 4.254 3 H 0.165 0.835 4 S 0.283 5.717 5 C -0.206 4.206 6 C -0.218 4.218 7 N -0.115 5.115 8 N -0.068 5.068 9 N -0.184 5.184 10 H 0.304 0.696 11 C 0.306 3.694 12 O -0.455 6.455 13 N -0.327 5.327 14 C -0.076 4.076 15 C 0.138 3.862 16 C -0.581 4.581 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.196 1.196 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.229 0.771 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.324 8.785 13.889 16.993 hybrid contribution -0.729 -0.031 -2.118 2.240 sum -5.053 8.754 11.771 15.515 Atomic orbital electron populations 1.22142 0.88599 1.04955 1.04737 1.23863 1.02802 1.04784 0.93910 0.83515 1.86986 1.67273 1.26363 0.91050 1.24546 1.01127 0.93174 1.01731 1.23448 1.08374 1.02272 0.87755 1.74242 1.07920 1.02109 1.27267 1.81815 1.22319 1.19068 0.83596 1.48640 1.41090 1.17518 1.11198 0.69614 1.19890 0.78523 0.86610 0.84358 1.90722 1.51903 1.17612 1.85268 1.48039 1.63231 1.12018 1.09393 1.22142 1.01851 0.78960 1.04603 1.18845 0.94195 0.91836 0.81343 1.21685 0.93758 1.35072 1.07627 0.92427 1.25821 0.98616 0.96182 0.98369 1.70041 1.21706 1.42135 1.22835 0.85446 0.78955 0.78102 0.78505 1.18925 1.20949 1.19614 0.91287 0.89674 0.88485 0.77069 0.90655 0.90759 0.88411 0.95310 0.98038 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.67 71.98 0.62 -2.01 16 2 C -0.12 -2.73 1.82 29.85 0.05 -2.68 16 3 H 0.15 2.21 6.89 -2.39 -0.02 2.20 16 4 S 0.05 1.18 20.86 -56.49 -1.18 0.01 16 5 C 0.04 0.82 7.06 83.46 0.59 1.41 16 6 C -0.05 -1.12 11.86 83.94 1.00 -0.13 16 7 N -0.25 -6.09 12.32 -58.19 -0.72 -6.81 16 8 N -0.09 -2.05 13.90 37.02 0.51 -1.54 16 9 N -0.46 -8.21 6.62 -54.38 -0.36 -8.57 16 10 H 0.45 5.23 6.75 -213.20 -1.44 3.79 16 11 C 0.52 18.84 6.80 87.66 0.60 19.43 16 12 O -0.57 -27.08 15.72 -3.03 -0.05 -27.13 16 13 N -0.60 -22.15 2.86 -851.12 -2.43 -24.58 16 14 C 0.07 1.58 9.87 127.77 1.26 2.84 16 15 C 0.26 12.96 5.16 85.63 0.44 13.40 16 16 C -0.54 -29.34 9.39 25.60 0.24 -29.10 16 17 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 18 C 0.01 0.52 5.46 84.65 0.46 0.98 16 19 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 20 Si 0.97 42.95 29.54 68.60 2.03 44.97 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 1.06 5.51 -2.39 -0.01 1.05 16 26 H 0.10 1.55 6.84 -2.39 -0.02 1.53 16 27 H 0.21 3.22 8.06 -2.91 -0.02 3.19 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.92 8.07 -2.38 -0.02 1.90 16 30 H 0.10 1.51 5.17 -2.39 -0.01 1.50 16 31 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 32 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -73.12 297.69 3.07 -70.05 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -0.29 Total: 3.23 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.26 Total: 4.15 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -2.71 Total: -95.29 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.18 Total: 0.01 kcal Total: -73.12 3.07 -70.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156022436.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.037 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds