Wall clock time and date at job start Mon Mar 30 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46904 * 110.99974 * 306.04809 * 12 2 1 14 14 C 1.46899 * 110.99859 * 69.99981 * 12 2 1 15 15 C 1.50700 * 109.47085 * 170.00077 * 14 12 2 16 16 O 1.21281 * 119.99772 * 359.97438 * 15 14 12 17 17 N 1.34773 * 120.00330 * 179.97438 * 15 14 12 18 18 C 1.39067 * 120.00335 * 180.02562 * 17 15 14 19 19 N 1.29892 * 125.65267 * 0.02562 * 18 17 15 20 20 N 1.26248 * 117.66483 * 179.97438 * 19 18 17 21 21 C 1.29523 * 116.57660 * 359.97438 * 20 19 18 22 22 S 1.71308 * 125.65540 * 179.71867 * 18 17 15 23 23 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 24 24 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.47009 * 60.00040 * 13 12 2 28 28 H 1.08999 * 109.47192 * 180.02562 * 13 12 2 29 29 H 1.09002 * 109.46724 * 300.00378 * 13 12 2 30 30 H 1.09006 * 109.47401 * 289.99825 * 14 12 2 31 31 H 1.09000 * 109.47534 * 50.00268 * 14 12 2 32 32 H 0.97000 * 119.99576 * 0.02562 * 17 15 14 33 33 H 1.08006 * 126.14532 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4774 -0.5160 -3.5795 16 8 3.1501 -1.5127 -3.4215 17 7 2.3778 0.0430 -4.8018 18 6 3.0459 -0.5234 -5.8820 19 7 3.7921 -1.5856 -5.8382 20 7 4.3288 -1.9698 -6.9144 21 6 4.0814 -1.2615 -7.9703 22 16 3.0152 0.0600 -7.4924 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7089 1.1611 3.4845 27 1 0.3490 -1.9547 -1.3696 28 1 1.8139 -2.5259 -2.2043 29 1 1.7058 -2.6220 -0.4304 30 1 0.6813 0.1055 -2.6088 31 1 2.1025 1.1191 -2.2603 32 1 1.8400 0.8404 -4.9280 33 1 4.4574 -1.4487 -8.9654 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161728644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:15 Heat of formation + Delta-G solvation = 35.634837 kcal Electronic energy + Delta-G solvation = -18300.805076 eV Core-core repulsion = 15296.288683 eV Total energy + Delta-G solvation = -3004.516394 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.35182 -40.97862 -38.54791 -36.33640 -34.71421 -31.96479 -30.87586 -29.23044 -27.34027 -27.20626 -25.69961 -23.59439 -21.37867 -20.92618 -20.25948 -18.54868 -18.39943 -17.84527 -17.26655 -16.74222 -16.21152 -16.05927 -15.69819 -15.37614 -14.90786 -14.43552 -14.29702 -14.27482 -13.45967 -12.96615 -12.90657 -12.64913 -12.57532 -12.53861 -12.17910 -12.04355 -11.93200 -11.60959 -11.33934 -10.98353 -10.65972 -10.64645 -10.47390 -9.91180 -8.88577 -8.11010 -6.19855 -0.50869 -0.39032 0.22477 1.35138 1.43182 1.44130 1.51819 1.68807 1.83273 2.44108 3.17939 3.18617 3.44153 3.77790 4.04414 4.30672 4.38586 4.54046 4.57123 4.68729 4.82179 4.93003 4.94791 5.11654 5.23231 5.51109 5.70961 5.80857 5.97687 6.19552 6.44239 6.67144 6.90461 6.97936 7.48664 7.68513 8.94522 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047925 B = 0.003730 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.106908 B = 7505.038354 C = 7830.947375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.218 3.782 3 H 0.022 0.978 4 C -0.518 4.518 5 H 0.046 0.954 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.278 1.278 12 N -0.540 5.540 13 C 0.041 3.959 14 C 0.044 3.956 15 C 0.511 3.489 16 O -0.496 6.496 17 N -0.617 5.617 18 C 0.209 3.791 19 N -0.336 5.336 20 N -0.278 5.278 21 C -0.014 4.014 22 S 0.195 5.805 23 H 0.039 0.961 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.445 0.555 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 4.097 -22.974 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.039 0.961 4 C -0.557 4.557 5 H 0.065 0.935 6 C -0.181 4.181 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.264 5.264 13 C -0.107 4.107 14 C -0.088 4.088 15 C 0.296 3.704 16 O -0.364 6.364 17 N -0.273 5.273 18 C -0.161 4.161 19 N -0.181 5.181 20 N -0.112 5.112 21 C -0.317 4.317 22 S 0.432 5.568 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.287 0.713 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -0.180 3.181 -22.362 22.588 hybrid contribution -0.702 -0.065 1.052 1.267 sum -0.882 3.116 -21.310 21.554 Atomic orbital electron populations 1.22230 0.99485 0.99445 1.00842 1.19135 0.90567 0.93139 0.86016 0.96061 1.21317 1.30679 1.12449 0.91256 0.93550 1.25546 0.95403 0.95818 1.01340 1.69958 1.37639 1.23816 1.24106 0.85697 0.78586 0.78740 0.79092 1.20541 1.20056 1.20315 1.61888 1.60006 1.02942 1.01534 1.22214 0.96213 0.90954 1.01292 1.21987 0.99415 0.99217 0.88133 1.21564 0.81254 0.84087 0.83525 1.90802 1.37652 1.24826 1.83159 1.43032 1.48615 1.31130 1.04488 1.26428 0.98309 0.95911 0.95429 1.71502 1.12617 1.13360 1.20582 1.71366 1.19025 1.25844 0.94931 1.32038 1.00683 0.93812 1.05129 1.84401 1.46417 1.29373 0.96577 0.94189 0.95087 0.91717 0.92844 0.95462 0.92113 0.93255 0.89360 0.86008 0.71285 0.72192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.24 8.22 71.98 0.59 -6.65 16 2 C 0.22 10.66 2.31 44.17 0.10 10.76 16 3 H 0.02 1.12 7.93 -2.39 -0.02 1.10 16 4 C -0.52 -28.90 7.97 25.60 0.20 -28.70 16 5 H 0.05 2.69 7.10 -2.91 -0.02 2.67 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -51.31 11.32 21.45 0.24 -51.06 16 8 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 N -0.54 -23.32 4.44 -906.02 -4.02 -27.34 16 13 C 0.04 1.75 8.46 127.69 1.08 2.83 16 14 C 0.04 1.39 5.02 85.56 0.43 1.82 16 15 C 0.51 16.36 7.48 87.66 0.66 17.02 16 16 O -0.50 -21.28 13.02 -3.03 -0.04 -21.32 16 17 N -0.62 -13.73 5.41 -313.17 -1.69 -15.42 16 18 C 0.21 5.14 8.14 179.11 1.46 6.60 16 19 N -0.34 -11.22 9.74 -59.10 -0.58 -11.80 16 20 N -0.28 -7.78 11.65 -57.35 -0.67 -8.45 16 21 C -0.01 -0.21 12.69 130.58 1.66 1.45 16 22 S 0.20 2.43 23.31 -56.49 -1.32 1.12 16 23 H 0.04 1.48 6.91 -2.38 -0.02 1.46 16 24 H 0.03 1.38 6.33 -2.39 -0.02 1.36 16 25 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 26 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.03 1.06 6.21 -2.39 -0.01 1.05 16 28 H 0.06 2.56 5.83 -2.39 -0.01 2.54 16 29 H 0.05 2.28 6.86 -2.39 -0.02 2.27 16 30 H 0.09 2.32 7.06 -2.38 -0.02 2.30 16 31 H 0.12 3.35 7.93 -2.39 -0.02 3.34 16 32 H 0.44 5.31 8.82 -92.71 -0.82 4.49 16 33 H 0.26 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -78.06 288.74 0.92 -77.13 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 0.34 Total: 4.15 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.63 Total: 6.56 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -6.72 Total: -114.07 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.32 Total: 1.12 kcal Total: -78.06 0.92 -77.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161728644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.769 kcal (2) G-P(sol) polarization free energy of solvation -78.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds